MultiQC_miso_batch2_verysensitive

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        This report was generated using MultiQC, version 1.29

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        MultiQC_miso_batch2_verysensitive

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        This report has been generated by the nf-core/mag analysis pipeline. For information about how to interpret these results, please see the documentation.
        Report generated on 2025-12-13, 00:32 UTC based on data in: /mnt/batch/tasks/workitems/job-02608b11eba7aca92b28-NFCORE_MAG_MAG_MULTIQC/job-1/nf-64b4c35bc5e71ca2f71158793b5b61e9/wd

        General Statistics

        Showing 358/358 rows and 16/29 columns.
        Sample Name% Dups (raw)% GC (raw)Avg. length (raw)Median length (raw)M Seqs (raw)% Fails (raw)% Dups (processed)% GC (processed)Avg. length (processed)Median length (processed)M Seqs (processed)% Fails (processed)% Duplication% > Q30Mb Q30 basesReads After FilteringGC content% PF% Adapter% Aligned (Host)% Aligned (Assem.)N50 (Kbp)N50 (Kbp)Assembly Length (Mbp)Assembly Length (Mbp)ContigsBasesCDSOrganism
        F1_run0
        1.6%
        100.0%
        3629.6Mb
        24.2M
        41.5%
        100.0%
        0.7%
        3.1%
        F1_run0_raw_1
        31.1%
        41.0%
        150bp
        150bp
        12.1M
        0%
        F1_run0_raw_2
        31.2%
        41.0%
        150bp
        150bp
        12.1M
        0%
        F1_run0_trimmed_1
        31.7%
        41.0%
        150bp
        150bp
        11.8M
        0%
        F1_run0_trimmed_2
        31.9%
        41.0%
        150bp
        150bp
        11.8M
        0%
        F2_run0
        1.9%
        100.0%
        3638.6Mb
        24.3M
        40.4%
        100.0%
        0.7%
        2.1%
        F2_run0_raw_1
        24.7%
        40.0%
        150bp
        150bp
        12.1M
        0%
        F2_run0_raw_2
        24.5%
        40.0%
        150bp
        150bp
        12.1M
        0%
        F2_run0_trimmed_1
        24.9%
        40.0%
        150bp
        150bp
        11.9M
        0%
        F2_run0_trimmed_2
        24.8%
        40.0%
        150bp
        150bp
        11.9M
        0%
        F3_run0
        1.7%
        100.0%
        3655.4Mb
        24.4M
        40.7%
        100.0%
        0.6%
        0.4%
        F3_run0_raw_1
        23.2%
        40.0%
        150bp
        150bp
        12.2M
        0%
        F3_run0_raw_2
        23.1%
        40.0%
        150bp
        150bp
        12.2M
        0%
        F3_run0_trimmed_1
        23.2%
        40.0%
        150bp
        150bp
        12.1M
        0%
        F3_run0_trimmed_2
        23.1%
        40.0%
        150bp
        150bp
        12.1M
        0%
        F4_run0
        1.5%
        100.0%
        3615.1Mb
        24.1M
        39.0%
        100.0%
        0.3%
        0.2%
        F4_run0_raw_1
        28.9%
        38.0%
        150bp
        150bp
        12.1M
        0%
        F4_run0_raw_2
        28.5%
        39.0%
        150bp
        150bp
        12.1M
        0%
        F4_run0_trimmed_1
        28.9%
        38.0%
        150bp
        150bp
        12.0M
        0%
        F4_run0_trimmed_2
        28.5%
        39.0%
        150bp
        150bp
        12.0M
        0%
        F5_run0
        1.2%
        100.0%
        3610.2Mb
        24.1M
        37.9%
        100.0%
        0.3%
        0.2%
        F5_run0_raw_1
        24.6%
        37.0%
        150bp
        150bp
        12.0M
        0%
        F5_run0_raw_2
        24.4%
        37.0%
        150bp
        150bp
        12.0M
        0%
        F5_run0_trimmed_1
        24.5%
        37.0%
        150bp
        150bp
        12.0M
        0%
        F5_run0_trimmed_2
        24.4%
        37.0%
        150bp
        150bp
        12.0M
        0%
        F6_run0
        1.3%
        100.0%
        3639.8Mb
        24.3M
        42.9%
        100.0%
        1.6%
        6.3%
        F6_run0_raw_1
        13.5%
        42.0%
        150bp
        150bp
        12.1M
        0%
        F6_run0_raw_2
        13.6%
        42.0%
        150bp
        150bp
        12.1M
        0%
        F6_run0_trimmed_1
        13.9%
        42.0%
        150bp
        150bp
        11.4M
        10%
        F6_run0_trimmed_2
        14.0%
        42.0%
        150bp
        150bp
        11.4M
        10%
        F7_run0
        0.6%
        100.0%
        3522.9Mb
        23.5M
        57.3%
        100.0%
        0.2%
        0.0%
        F7_run0_raw_1
        29.6%
        57.0%
        150bp
        150bp
        11.7M
        10%
        F7_run0_raw_2
        29.6%
        57.0%
        150bp
        150bp
        11.7M
        10%
        F7_run0_trimmed_1
        29.6%
        57.0%
        150bp
        150bp
        11.7M
        10%
        F7_run0_trimmed_2
        29.6%
        57.0%
        150bp
        150bp
        11.7M
        10%
        F8_run0
        0.8%
        100.0%
        3612.1Mb
        24.1M
        40.2%
        100.0%
        0.4%
        0.1%
        F8_run0_raw_1
        11.7%
        40.0%
        150bp
        150bp
        12.0M
        10%
        F8_run0_raw_2
        11.6%
        40.0%
        150bp
        150bp
        12.0M
        10%
        F8_run0_trimmed_1
        11.7%
        40.0%
        150bp
        150bp
        12.0M
        10%
        F8_run0_trimmed_2
        11.6%
        40.0%
        150bp
        150bp
        12.0M
        10%
        MEGAHIT-CONCOCT-group-0_0
        4.7Kbp
        0.4Mbp
        MEGAHIT-CONCOCT-group-0_1
        3.4Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_2
        73.4Kbp
        2.8Mbp
        56
        2804919
        2809
        Genus species
        MEGAHIT-CONCOCT-group-0_3
        291.9Kbp
        4.3Mbp
        21
        4324008
        4120
        Genus species
        MEGAHIT-CONCOCT-group-0_4
        3.4Kbp
        2.9Mbp
        1018
        2948223
        2909
        Genus species
        MEGAHIT-CONCOCT-group-0_5
        4.0Kbp
        3.9Mbp
        1275
        3947148
        4106
        Genus species
        MEGAHIT-CONCOCT-group-0_6
        31.3Kbp
        4.1Mbp
        405
        4112395
        3989
        Genus species
        MEGAHIT-CONCOCT-group-0_7
        1.2Kbp
        0.4Mbp
        307
        386102
        343
        Genus species
        MEGAHIT-CONCOCT-group-0_8
        2.1Kbp
        0.8Mbp
        402
        831092
        839
        Genus species
        MEGAHIT-CONCOCT-group-0_9
        1.6Kbp
        0.5Mbp
        290
        497805
        456
        Genus species
        MEGAHIT-CONCOCT-group-0_10
        16.9Kbp
        2.9Mbp
        MEGAHIT-CONCOCT-group-0_11
        1.7Kbp
        2.3Mbp
        1320
        2253816
        2543
        Genus species
        MEGAHIT-CONCOCT-group-0_12
        11.0Kbp
        9.7Mbp
        MEGAHIT-CONCOCT-group-0_13
        44.6Kbp
        0.0Mbp
        1
        44617
        61
        Genus species
        MEGAHIT-CONCOCT-group-0_14
        12.6Kbp
        2.4Mbp
        308
        2420598
        2392
        Genus species
        MEGAHIT-CONCOCT-group-0_15
        4.0Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_16
        1.6Kbp
        1.3Mbp
        782
        1300604
        1276
        Genus species
        MEGAHIT-CONCOCT-group-0_17
        1.8Kbp
        4.4Mbp
        2409
        4363040
        4248
        Genus species
        MEGAHIT-CONCOCT-group-0_18
        14.2Kbp
        0.7Mbp
        MEGAHIT-CONCOCT-group-0_19
        15.7Kbp
        0.1Mbp
        4
        50218
        23
        Genus species
        MEGAHIT-CONCOCT-group-0_20
        2.1Kbp
        2.6Mbp
        1293
        2554488
        2554
        Genus species
        MEGAHIT-CONCOCT-group-0_21
        3.6Kbp
        0.0Mbp
        19
        49394
        46
        Genus species
        MEGAHIT-CONCOCT-group-0_22
        9.1Kbp
        1.0Mbp
        MEGAHIT-CONCOCT-group-0_23
        2.8Kbp
        0.1Mbp
        53
        137395
        127
        Genus species
        MEGAHIT-CONCOCT-group-0_24
        1.8Kbp
        0.0Mbp
        4
        7911
        2
        Genus species
        MEGAHIT-CONCOCT-group-0_25
        2.0Kbp
        0.0Mbp
        17
        31010
        35
        Genus species
        MEGAHIT-CONCOCT-group-0_26
        4.2Kbp
        9.9Mbp
        MEGAHIT-CONCOCT-group-0_28
        46.0Kbp
        3.0Mbp
        225
        2975142
        3001
        Genus species
        MEGAHIT-CONCOCT-group-0_29
        2.7Kbp
        4.1Mbp
        1776
        4084689
        4630
        Genus species
        MEGAHIT-CONCOCT-group-0_30
        20.8Kbp
        0.0Mbp
        5
        40388
        19
        Genus species
        MEGAHIT-CONCOCT-group-0_31
        1.1Kbp
        0.0Mbp
        4
        4340
        3
        Genus species
        MEGAHIT-CONCOCT-group-0_32
        11.7Kbp
        0.1Mbp
        15
        76057
        22
        Genus species
        MEGAHIT-CONCOCT-group-0_33
        63.2Kbp
        4.3Mbp
        183
        4304721
        4012
        Genus species
        MEGAHIT-CONCOCT-group-0_34
        3.6Kbp
        4.6Mbp
        1537
        4560596
        4725
        Genus species
        MEGAHIT-CONCOCT-group-0_36
        7.7Kbp
        1.1Mbp
        252
        1072061
        1233
        Genus species
        MEGAHIT-CONCOCT-group-0_37
        2.0Kbp
        1.4Mbp
        691
        1417620
        1597
        Genus species
        MEGAHIT-CONCOCT-group-0_38
        12.0Kbp
        2.5Mbp
        329
        2513378
        2366
        Genus species
        MEGAHIT-CONCOCT-group-0_39
        17.2Kbp
        4.5Mbp
        496
        4450055
        4207
        Genus species
        MEGAHIT-CONCOCT-group-0_40
        1.9Kbp
        0.0Mbp
        1
        1862
        1
        Genus species
        MEGAHIT-CONCOCT-group-0_42
        280.1Kbp
        4.9Mbp
        36
        4948975
        4769
        Genus species
        MEGAHIT-CONCOCT-group-0_43
        5.7Kbp
        3.7Mbp
        913
        3669971
        3560
        Genus species
        MEGAHIT-CONCOCT-group-0_44
        67.6Kbp
        4.6Mbp
        122
        4553853
        4273
        Genus species
        MEGAHIT-CONCOCT-group-0_45
        1.3Kbp
        0.0Mbp
        1
        1325
        1
        Genus species
        MEGAHIT-CONCOCT-group-0_47
        3.3Kbp
        1.2Mbp
        398
        1166500
        1122
        Genus species
        MEGAHIT-CONCOCT-group-0_48
        280.0Kbp
        2.8Mbp
        26
        2849981
        2717
        Genus species
        MEGAHIT-CONCOCT-group-0_49
        2.6Kbp
        1.0Mbp
        425
        1012940
        1099
        Genus species
        MEGAHIT-CONCOCT-group-0_50
        4.1Kbp
        1.1Mbp
        332
        1087119
        1095
        Genus species
        MEGAHIT-CONCOCT-group-0_51
        3.0Kbp
        0.0Mbp
        1
        2957
        1
        Genus species
        MEGAHIT-CONCOCT-group-0_52
        1.4Kbp
        2.6Mbp
        MEGAHIT-CONCOCT-group-0_53
        28.9Kbp
        5.4Mbp
        320
        5443933
        5225
        Genus species
        MEGAHIT-CONCOCT-group-0_54
        5.3Kbp
        0.1Mbp
        19
        70847
        54
        Genus species
        MEGAHIT-CONCOCT-group-0_55
        7.8Kbp
        3.4Mbp
        707
        3395272
        3742
        Genus species
        MEGAHIT-CONCOCT-group-0_56
        39.1Kbp
        2.3Mbp
        116
        2268253
        2268
        Genus species
        MEGAHIT-CONCOCT-group-0_58
        19.2Kbp
        5.1Mbp
        366
        5065139
        4661
        Genus species
        MEGAHIT-CONCOCT-group-0_59
        4.5Kbp
        1.8Mbp
        MEGAHIT-CONCOCT-group-0_60
        289.4Kbp
        1.9Mbp
        24
        1881737
        1905
        Genus species
        MEGAHIT-CONCOCT-group-0_61
        12.4Kbp
        4.5Mbp
        619
        4496687
        4288
        Genus species
        MEGAHIT-CONCOCT-group-0_62
        104.9Kbp
        2.7Mbp
        51
        2713663
        2570
        Genus species
        MEGAHIT-CONCOCT-group-0_63
        92.6Kbp
        2.7Mbp
        93
        2671095
        2608
        Genus species
        MEGAHIT-CONCOCT-group-0_64
        1.8Kbp
        1.4Mbp
        815
        1423213
        1371
        Genus species
        MEGAHIT-CONCOCT-group-0_65
        31.3Kbp
        0.0Mbp
        1
        31312
        51
        Genus species
        MEGAHIT-CONCOCT-group-0_66
        15.5Kbp
        2.8Mbp
        280
        2778970
        2551
        Genus species
        MEGAHIT-CONCOCT-group-0_67
        3.0Kbp
        0.1Mbp
        34
        73759
        19
        Genus species
        MEGAHIT-CONCOCT-group-0_68
        8.2Kbp
        4.0Mbp
        MEGAHIT-CONCOCT-group-0_69
        327.5Kbp
        3.6Mbp
        26
        3554746
        3231
        Genus species
        MEGAHIT-CONCOCT-group-0_70
        10.1Kbp
        0.7Mbp
        151
        678060
        727
        Genus species
        MEGAHIT-CONCOCT-group-0_72
        7.4Kbp
        0.5Mbp
        MEGAHIT-CONCOCT-group-0_73
        2.0Kbp
        1.7Mbp
        855
        1672533
        1734
        Genus species
        MEGAHIT-CONCOCT-group-0_74
        32.0Kbp
        4.1Mbp
        257
        4142990
        4361
        Genus species
        MEGAHIT-CONCOCT-group-0_75
        17.3Kbp
        4.6Mbp
        452
        4592127
        4293
        Genus species
        MEGAHIT-CONCOCT-group-0_76
        1.7Kbp
        1.0Mbp
        506
        963368
        1062
        Genus species
        MEGAHIT-CONCOCT-group-0_77
        1.4Kbp
        0.8Mbp
        556
        813161
        797
        Genus species
        MEGAHIT-CONCOCT-group-0_78
        1.4Kbp
        1.3Mbp
        858
        1256854
        1204
        Genus species
        MEGAHIT-CONCOCT-group-0_79
        3.8Kbp
        1.0Mbp
        359
        995552
        1085
        Genus species
        MEGAHIT-CONCOCT-group-0_80
        9.2Kbp
        0.2Mbp
        28
        197467
        164
        Genus species
        MEGAHIT-CONCOCT-group-0_81
        2.0Kbp
        0.0Mbp
        10
        17173
        13
        Genus species
        MEGAHIT-CONCOCT-group-0_82
        3.7Kbp
        9.6Mbp
        3535
        9600647
        9733
        Genus species
        MEGAHIT-CONCOCT-group-0_83
        247.4Kbp
        3.3Mbp
        20
        3313115
        2919
        Genus species
        MEGAHIT-CONCOCT-group-0_85
        124.9Kbp
        3.6Mbp
        276
        3625691
        3542
        Genus species
        MEGAHIT-CONCOCT-group-0_86
        4.9Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_87
        122.6Kbp
        3.7Mbp
        40
        3738528
        3849
        Genus species
        MEGAHIT-CONCOCT-group-0_88
        25.9Kbp
        9.4Mbp
        586
        9383936
        9106
        Genus species
        MEGAHIT-CONCOCT-group-0_89
        2.0Kbp
        3.3Mbp
        1729
        3275671
        3324
        Genus species
        MEGAHIT-CONCOCT-group-0_90
        44.5Kbp
        0.1Mbp
        12
        69469
        81
        Genus species
        MEGAHIT-CONCOCT-group-0_91
        1.7Kbp
        6.6Mbp
        MEGAHIT-CONCOCT-group-0_92
        6.1Kbp
        1.4Mbp
        299
        1378748
        1385
        Genus species
        MEGAHIT-CONCOCT-group-0_93
        18.0Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_94
        10.3Kbp
        0.6Mbp
        97
        588909
        543
        Genus species
        MEGAHIT-CONCOCT-group-0_95
        80.9Kbp
        3.4Mbp
        95
        3446503
        3320
        Genus species
        MEGAHIT-CONCOCT-group-0_97
        41.8Kbp
        2.8Mbp
        96
        2831343
        2635
        Genus species
        MEGAHIT-CONCOCT-group-0_99
        5.8Kbp
        0.8Mbp
        209
        763160
        803
        Genus species
        MEGAHIT-CONCOCT-group-0_100
        4.7Kbp
        0.7Mbp
        211
        692176
        613
        Genus species
        MEGAHIT-CONCOCT-group-0_101
        47.8Kbp
        2.8Mbp
        179
        2800719
        2869
        Genus species
        MEGAHIT-CONCOCT-group-0_102
        2.0Kbp
        9.8Mbp
        5112
        9790859
        9857
        Genus species
        MEGAHIT-CONCOCT-group-0_103
        2.3Kbp
        0.1Mbp
        41
        89189
        85
        Genus species
        MEGAHIT-CONCOCT-group-0_104
        2.2Kbp
        0.0Mbp
        1
        2234
        1
        Genus species
        MEGAHIT-CONCOCT-group-0_105
        7.8Kbp
        3.2Mbp
        632
        3184453
        3108
        Genus species
        MEGAHIT-CONCOCT-group-0_106
        1.6Kbp
        0.0Mbp
        2
        2660
        1
        Genus species
        MEGAHIT-CONCOCT-group-0_107
        51.9Kbp
        2.5Mbp
        84
        2477125
        2373
        Genus species
        MEGAHIT-CONCOCT-group-0_108
        8.9Kbp
        0.6Mbp
        131
        600443
        663
        Genus species
        MEGAHIT-CONCOCT-group-0_109
        1.3Kbp
        0.0Mbp
        5
        6598
        5
        Genus species
        MEGAHIT-CONCOCT-group-0_110
        12.1Kbp
        0.0Mbp
        1
        12075
        11
        Genus species
        MEGAHIT-CONCOCT-group-0_111
        27.6Kbp
        4.8Mbp
        327
        4799466
        4496
        Genus species
        MEGAHIT-CONCOCT-group-0_112
        46.6Kbp
        2.1Mbp
        135
        2058527
        2047
        Genus species
        MEGAHIT-CONCOCT-group-0_113
        195.6Kbp
        0.2Mbp
        3
        239569
        299
        Genus species
        MEGAHIT-CONCOCT-group-0_114
        3.1Kbp
        3.8Mbp
        1434
        3825624
        3795
        Genus species
        MEGAHIT-MaxBin2-group-0.001
        7.3Kbp
        0.3Mbp
        65
        277220
        281
        Genus species
        MEGAHIT-MaxBin2-group-0.002
        40.9Kbp
        3.0Mbp
        153
        3037978
        2820
        Genus species
        MEGAHIT-MaxBin2-group-0.003
        6.2Kbp
        0.8Mbp
        177
        768945
        830
        Genus species
        MEGAHIT-MaxBin2-group-0.004
        47.8Kbp
        2.9Mbp
        183
        2877810
        2948
        Genus species
        MEGAHIT-MaxBin2-group-0.005
        289.4Kbp
        2.1Mbp
        65
        2098121
        2110
        Genus species
        MEGAHIT-MaxBin2-group-0.006
        53.4Kbp
        2.7Mbp
        149
        2724529
        2695
        Genus species
        MEGAHIT-MaxBin2-group-0.007
        16.1Kbp
        5.0Mbp
        579
        4953212
        4700
        Genus species
        MEGAHIT-MaxBin2-group-0.008
        105.0Kbp
        0.1Mbp
        MEGAHIT-MaxBin2-group-0.009
        38.3Kbp
        2.4Mbp
        142
        2397123
        2387
        Genus species
        MEGAHIT-MaxBin2-group-0.010
        27.0Kbp
        4.6Mbp
        315
        4630964
        4335
        Genus species
        MEGAHIT-MaxBin2-group-0.011
        85.7Kbp
        2.9Mbp
        133
        2928800
        2774
        Genus species
        MEGAHIT-MaxBin2-group-0.012
        257.3Kbp
        3.2Mbp
        113
        3230132
        3172
        Genus species
        MEGAHIT-MaxBin2-group-0.013
        41.1Kbp
        2.2Mbp
        199
        2185303
        2184
        Genus species
        MEGAHIT-MaxBin2-group-0.015
        12.5Kbp
        5.1Mbp
        722
        5052342
        4861
        Genus species
        MEGAHIT-MaxBin2-group-0.016
        8.2Kbp
        0.1Mbp
        17
        104310
        102
        Genus species
        MEGAHIT-MaxBin2-group-0.017
        7.9Kbp
        2.9Mbp
        586
        2941521
        2842
        Genus species
        MEGAHIT-MaxBin2-group-0.018
        9.5Kbp
        0.7Mbp
        MEGAHIT-MaxBin2-group-0.021
        5.9Kbp
        0.8Mbp
        MEGAHIT-MaxBin2-group-0.023
        15.2Kbp
        5.3Mbp
        855
        5334294
        5145
        Genus species
        MEGAHIT-MaxBin2-group-0.024
        11.1Kbp
        3.4Mbp
        MEGAHIT-MaxBin2-group-0.025
        59.2Kbp
        2.6Mbp
        102
        2604579
        2487
        Genus species
        MEGAHIT-MaxBin2-group-0.026
        2.3Kbp
        3.2Mbp
        1445
        3180456
        3234
        Genus species
        MEGAHIT-MaxBin2-group-0.027
        2.4Kbp
        5.7Mbp
        2623
        5708439
        6482
        Genus species
        MEGAHIT-MaxBin2-group-0.028
        4.7Kbp
        0.8Mbp
        247
        828190
        878
        Genus species
        MEGAHIT-MaxBin2-group-0.029
        2.1Kbp
        4.6Mbp
        2278
        4605553
        4601
        Genus species
        MEGAHIT-MaxBin2-group-0.030
        26.3Kbp
        4.5Mbp
        478
        4548517
        4769
        Genus species
        MEGAHIT-MaxBin2-group-0.032
        3.4Kbp
        6.4Mbp
        2328
        6402931
        6375
        Genus species
        MEGAHIT-MaxBin2-group-0.033
        28.4Kbp
        6.1Mbp
        448
        6084709
        5962
        Genus species
        MEGAHIT-MaxBin2-group-0.034
        64.9Kbp
        4.8Mbp
        281
        4772241
        4515
        Genus species
        MEGAHIT-MaxBin2-group-0.035
        14.0Kbp
        3.0Mbp
        394
        3009478
        2782
        Genus species
        MEGAHIT-MaxBin2-group-0.036
        69.5Kbp
        2.9Mbp
        161
        2937405
        2888
        Genus species
        MEGAHIT-MaxBin2-group-0.037
        11.4Kbp
        0.1Mbp
        17
        142649
        173
        Genus species
        MEGAHIT-MaxBin2-group-0.038
        3.4Kbp
        4.4Mbp
        1602
        4392544
        4189
        Genus species
        MEGAHIT-MaxBin2-group-0.039
        3.5Kbp
        8.0Mbp
        MEGAHIT-MaxBin2-group-0.040
        2.1Kbp
        6.2Mbp
        2768
        6224436
        5518
        Genus species
        MEGAHIT-MaxBin2-group-0.041
        3.2Kbp
        5.8Mbp
        2236
        5796365
        5745
        Genus species
        MEGAHIT-MaxBin2-group-0.042
        122.6Kbp
        3.8Mbp
        49
        3803478
        3992
        Genus species
        MEGAHIT-MaxBin2-group-0.044
        41.0Kbp
        3.0Mbp
        172
        2979615
        2785
        Genus species
        MEGAHIT-MaxBin2-group-0.045
        12.7Kbp
        2.4Mbp
        292
        2355939
        2332
        Genus species
        MEGAHIT-MaxBin2-group-0.046
        81.2Kbp
        3.3Mbp
        95
        3303146
        3190
        Genus species
        MEGAHIT-MaxBin2-group-0.048
        327.5Kbp
        2.5Mbp
        21
        2522587
        2299
        Genus species
        MEGAHIT-MaxBin2-group-0.049
        4.4Kbp
        4.6Mbp
        1504
        4620616
        4892
        Genus species
        MEGAHIT-MaxBin2-group-0.050
        1.8Kbp
        7.6Mbp
        MEGAHIT-MaxBin2-group-0.051
        291.9Kbp
        4.4Mbp
        45
        4409461
        4196
        Genus species
        MEGAHIT-MaxBin2-group-0.052
        601.8Kbp
        0.8Mbp
        3
        757863
        673
        Genus species
        MEGAHIT-MaxBin2-group-0.053
        124.9Kbp
        3.6Mbp
        297
        3560155
        3471
        Genus species
        MEGAHIT-MaxBin2-group-0.054
        4.6Kbp
        7.3Mbp
        2235
        7261623
        7089
        Genus species
        MEGAHIT-MaxBin2-group-0.055
        36.3Kbp
        5.5Mbp
        584
        5463303
        5837
        Genus species
        MEGAHIT-MaxBin2-group-0.056
        8.3Kbp
        8.1Mbp
        2058
        8110029
        7830
        Genus species
        MEGAHIT-MaxBin2-group-0.057
        19.3Kbp
        5.0Mbp
        479
        4965771
        4944
        Genus species
        MEGAHIT-MaxBin2-group-0.058
        4.5Kbp
        3.7Mbp
        1168
        3737718
        3812
        Genus species
        MEGAHIT-MaxBin2-group-0.059
        269.4Kbp
        0.3Mbp
        1
        269376
        259
        Genus species
        MEGAHIT-MaxBin2-group-0.060
        2.1Kbp
        8.6Mbp
        4226
        8604084
        8416
        Genus species
        MEGAHIT-MaxBin2-group-0.061
        1.9Kbp
        3.6Mbp
        1892
        3555921
        3588
        Genus species
        MEGAHIT-MaxBin2-group-0.063
        1.5Kbp
        1.9Mbp
        1243
        1933145
        2136
        Genus species
        MEGAHIT-MaxBin2-group-0.064
        93.0Kbp
        3.1Mbp
        112
        3103642
        2880
        Genus species
        MEGAHIT-MaxBin2-group-0.065
        280.1Kbp
        5.0Mbp
        46
        4999363
        4828
        Genus species
        MEGAHIT-MaxBin2-group-0.066
        1.8Kbp
        5.2Mbp
        2842
        5193795
        5186
        Genus species
        MEGAHIT-MaxBin2-group-0.067
        247.4Kbp
        3.4Mbp
        42
        3404200
        3021
        Genus species
        MEGAHIT-MaxBin2-group-0.068
        36.3Kbp
        4.5Mbp
        212
        4525614
        4279
        Genus species
        MEGAHIT-MaxBin2-group-0.069
        8.1Kbp
        3.9Mbp
        757
        3932408
        3693
        Genus species
        MEGAHIT-MaxBin2-group-0.070
        1.7Kbp
        2.2Mbp
        1276
        2162190
        2437
        Genus species
        MEGAHIT-MaxBin2-group-0.071
        1.8Kbp
        2.4Mbp
        1267
        2354780
        2588
        Genus species
        MEGAHIT-MaxBin2-group-0.072
        15.2Kbp
        3.0Mbp
        338
        2962262
        2754
        Genus species
        MEGAHIT-MaxBin2-group-0.073
        2.6Kbp
        2.9Mbp
        1237
        2866299
        2935
        Genus species
        MEGAHIT-MaxBin2-group-0.074
        9.3Kbp
        3.4Mbp
        556
        3433495
        3437
        Genus species
        MEGAHIT-MaxBin2-group-0.075
        16.8Kbp
        2.9Mbp
        285
        2930489
        2867
        Genus species
        MEGAHIT-MetaBAT2-group-0.1
        289.4Kbp
        0.4Mbp
        2
        384407
        390
        Genus species
        MEGAHIT-MetaBAT2-group-0.2
        8.4Kbp
        0.6Mbp
        119
        649309
        629
        Genus species
        MEGAHIT-MetaBAT2-group-0.3
        195.6Kbp
        0.2Mbp
        3
        239569
        299
        Genus species
        MEGAHIT-MetaBAT2-group-0.4
        5.8Kbp
        0.8Mbp
        145
        797802
        827
        Genus species
        MEGAHIT-MetaBAT2-group-0.5
        7.1Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.6
        59.2Kbp
        2.4Mbp
        68
        2362900
        2241
        Genus species
        MEGAHIT-MetaBAT2-group-0.7
        2.2Kbp
        4.3Mbp
        MEGAHIT-MetaBAT2-group-0.8
        6.1Kbp
        0.3Mbp
        66
        298036
        361
        Genus species
        MEGAHIT-MetaBAT2-group-0.9
        3.4Kbp
        2.1Mbp
        666
        2078186
        2176
        Genus species
        MEGAHIT-MetaBAT2-group-0.10
        3.2Kbp
        0.4Mbp
        141
        429755
        443
        Genus species
        MEGAHIT-MetaBAT2-group-0.11
        104.9Kbp
        2.6Mbp
        43
        2576569
        2431
        Genus species
        MEGAHIT-MetaBAT2-group-0.12
        8.5Kbp
        4.5Mbp
        710
        4478878
        4574
        Genus species
        MEGAHIT-MetaBAT2-group-0.13
        55.8Kbp
        0.9Mbp
        24
        931595
        876
        Genus species
        MEGAHIT-MetaBAT2-group-0.14
        4.9Kbp
        2.0Mbp
        461
        2039712
        2075
        Genus species
        MEGAHIT-MetaBAT2-group-0.15
        8.3Kbp
        2.4Mbp
        419
        2426895
        2311
        Genus species
        MEGAHIT-MetaBAT2-group-0.16
        13.0Kbp
        3.9Mbp
        452
        3861187
        3697
        Genus species
        MEGAHIT-MetaBAT2-group-0.17
        3.4Kbp
        2.2Mbp
        701
        2217707
        2222
        Genus species
        MEGAHIT-MetaBAT2-group-0.18
        122.6Kbp
        3.6Mbp
        41
        3609085
        3719
        Genus species
        MEGAHIT-MetaBAT2-group-0.19
        61.4Kbp
        2.4Mbp
        70
        2413314
        2323
        Genus species
        MEGAHIT-MetaBAT2-group-0.20
        5.7Kbp
        2.7Mbp
        579
        2746502
        2805
        Genus species
        MEGAHIT-MetaBAT2-group-0.21
        303.9Kbp
        4.7Mbp
        25
        4709462
        4528
        Genus species
        MEGAHIT-MetaBAT2-group-0.22
        40.4Kbp
        2.2Mbp
        MEGAHIT-MetaBAT2-group-0.23
        52.7Kbp
        1.9Mbp
        61
        1945508
        1901
        Genus species
        MEGAHIT-MetaBAT2-group-0.24
        41.8Kbp
        2.9Mbp
        104
        2866382
        2683
        Genus species
        MEGAHIT-MetaBAT2-group-0.25
        4.1Kbp
        0.5Mbp
        139
        535866
        565
        Genus species
        MEGAHIT-MetaBAT2-group-0.26
        81.2Kbp
        3.2Mbp
        65
        3179941
        3025
        Genus species
        MEGAHIT-MetaBAT2-group-0.27
        5.2Kbp
        0.3Mbp
        72
        313831
        307
        Genus species
        MEGAHIT-MetaBAT2-group-0.28
        9.0Kbp
        4.0Mbp
        591
        4030124
        4065
        Genus species
        MEGAHIT-MetaBAT2-group-0.29
        4.4Kbp
        0.4Mbp
        113
        436580
        490
        Genus species
        MEGAHIT-MetaBAT2-group-0.30
        27.4Kbp
        5.7Mbp
        389
        5724604
        5525
        Genus species
        MEGAHIT-MetaBAT2-group-0.31
        17.5Kbp
        5.4Mbp
        533
        5410657
        5028
        Genus species
        MEGAHIT-MetaBAT2-group-0.33
        3.0Kbp
        0.9Mbp
        293
        877246
        886
        Genus species
        MEGAHIT-MetaBAT2-group-0.34
        37.8Kbp
        4.0Mbp
        157
        4038122
        3851
        Genus species
        MEGAHIT-MetaBAT2-group-0.35
        3.1Kbp
        1.4Mbp
        471
        1424823
        1471
        Genus species
        MEGAHIT-MetaBAT2-group-0.36
        299.8Kbp
        3.9Mbp
        18
        3877714
        3677
        Genus species
        MEGAHIT-MetaBAT2-group-0.37
        10.9Kbp
        6.2Mbp
        894
        6230809
        6247
        Genus species
        MEGAHIT-MetaBAT2-group-0.40
        5.1Kbp
        3.3Mbp
        747
        3258145
        3283
        Genus species
        MEGAHIT-MetaBAT2-group-0.41
        10.5Kbp
        2.3Mbp
        330
        2323130
        2199
        Genus species
        MEGAHIT-MetaBAT2-group-0.42
        55.0Kbp
        1.1Mbp
        45
        1119255
        1138
        Genus species
        MEGAHIT-MetaBAT2-group-0.44
        15.3Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.45
        17.0Kbp
        3.7Mbp
        349
        3688006
        3453
        Genus species
        MEGAHIT-MetaBAT2-group-0.46
        32.9Kbp
        3.7Mbp
        201
        3728127
        3837
        Genus species
        MEGAHIT-MetaBAT2-group-0.47
        15.3Kbp
        2.9Mbp
        263
        2888699
        2685
        Genus species
        MEGAHIT-MetaBAT2-group-0.48
        35.9Kbp
        0.3Mbp
        7
        277830
        270
        Genus species
        MEGAHIT-MetaBAT2-group-0.49
        3.1Kbp
        0.6Mbp
        205
        611600
        652
        Genus species
        MEGAHIT-MetaBAT2-group-0.50
        29.6Kbp
        3.6Mbp
        191
        3592031
        3332
        Genus species
        MEGAHIT-MetaBAT2-group-0.51
        68.5Kbp
        4.5Mbp
        115
        4499269
        4217
        Genus species
        MEGAHIT-MetaBAT2-group-0.52
        15.9Kbp
        2.7Mbp
        242
        2726070
        2504
        Genus species
        MEGAHIT-MetaBAT2-group-0.53
        8.5Kbp
        1.9Mbp
        366
        1899974
        2187
        Genus species
        MEGAHIT-MetaBAT2-group-0.54
        13.3Kbp
        4.1Mbp
        526
        4133310
        4128
        Genus species
        MEGAHIT-MetaBAT2-group-0.55
        3.3Kbp
        1.2Mbp
        385
        1211395
        1167
        Genus species
        MEGAHIT-MetaBAT2-group-0.56
        2.0Kbp
        0.9Mbp
        429
        878918
        968
        Genus species
        MEGAHIT-MetaBAT2-group-0.57
        14.8Kbp
        2.2Mbp
        240
        2245795
        2243
        Genus species
        MEGAHIT-MetaBAT2-group-0.58
        3.8Kbp
        2.6Mbp
        754
        2572219
        2579
        Genus species
        MEGAHIT-MetaBAT2-group-0.59
        3.7Kbp
        0.2Mbp
        65
        220452
        211
        Genus species
        MEGAHIT-MetaBAT2-group-0.60
        44.2Kbp
        2.8Mbp
        98
        2829214
        2622
        Genus species
        MEGAHIT-MetaBAT2-group-0.61
        2.2Kbp
        1.1Mbp
        511
        1149187
        1263
        Genus species
        MEGAHIT-MetaBAT2-group-0.63
        3.4Kbp
        8.0Mbp
        2563
        7957123
        5143
        Genus species
        MEGAHIT-MetaBAT2-group-0.64
        247.4Kbp
        3.3Mbp
        20
        3313115
        2919
        Genus species
        MEGAHIT-MetaBAT2-group-0.65
        355.2Kbp
        1.4Mbp
        14
        1426161
        1425
        Genus species
        MEGAHIT-MetaBAT2-group-0.66
        73.4Kbp
        2.1Mbp
        41
        2145126
        2132
        Genus species
        MEGAHIT-MetaBAT2-group-0.67
        67.2Kbp
        0.7Mbp
        35
        702099
        712
        Genus species
        MEGAHIT-MetaBAT2-group-0.69
        59.2Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.70
        26.5Kbp
        0.4Mbp
        35
        368432
        417
        Genus species
        MEGAHIT-MetaBAT2-group-0.71
        6.8Kbp
        8.5Mbp
        1558
        8492425
        5196
        Genus species
        MEGAHIT-MetaBAT2-group-0.72
        12.1Kbp
        2.5Mbp
        287
        2454391
        2298
        Genus species
        MEGAHIT-MetaBAT2-group-0.73
        5.0Kbp
        2.0Mbp
        463
        2048391
        1894
        Genus species
        MEGAHIT-MetaBAT2-group-0.74
        14.3Kbp
        0.3Mbp
        33
        253476
        305
        Genus species
        MEGAHIT-MetaBAT2-group-0.75
        2.6Kbp
        1.1Mbp
        372
        1053683
        1087
        Genus species
        MEGAHIT-MetaBAT2-group-0.76
        8.9Kbp
        4.2Mbp
        667
        4242841
        4002
        Genus species
        MEGAHIT-MetaBAT2-group-0.77
        259.1Kbp
        0.3Mbp
        1
        259103
        252
        Genus species
        MEGAHIT-MetaBAT2-group-0.78
        280.0Kbp
        2.8Mbp
        21
        2820741
        2685
        Genus species
        MEGAHIT-MetaBAT2-group-0.79
        3.3Kbp
        0.3Mbp
        104
        322324
        311
        Genus species
        MEGAHIT-MetaBAT2-group-0.80
        327.5Kbp
        3.5Mbp
        19
        3534280
        3221
        Genus species
        MEGAHIT-MetaBAT2-group-0.81
        119.8Kbp
        0.2Mbp
        4
        212311
        260
        Genus species
        MEGAHIT-MetaBAT2-group-0.82
        92.6Kbp
        2.5Mbp
        64
        2490669
        2416
        Genus species
        MEGAHIT-MetaBAT2-group-0.83
        2.9Kbp
        1.7Mbp
        602
        1696793
        1708
        Genus species
        MEGAHIT-MetaBAT2-group-0.84
        3.6Kbp
        0.7Mbp
        192
        669001
        664
        Genus species
        MEGAHIT-MetaBAT2-group-0.85
        19.2Kbp
        0.3Mbp
        13
        255010
        231
        Genus species
        MEGAHIT-MetaBAT2-group-0.86
        190.7Kbp
        0.2Mbp
        2
        205346
        254
        Genus species
        MEGAHIT-MetaBAT2-group-0.87
        14.1Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.88
        20.4Kbp
        5.5Mbp
        406
        5490731
        5425
        Genus species
        MEGAHIT-MetaBAT2-group-0.89
        3.4Kbp
        1.6Mbp
        494
        1592066
        1495
        Genus species
        MEGAHIT-MetaBAT2-group-0.90
        3.7Kbp
        0.3Mbp
        87
        300169
        312
        Genus species
        MEGAHIT-MetaBAT2-group-0.91
        18.7Kbp
        0.9Mbp
        MEGAHIT-MetaBAT2-group-0.92
        4.4Kbp
        0.5Mbp
        137
        529726
        547
        Genus species
        MEGAHIT-MetaBAT2-group-0.93
        162.5Kbp
        3.0Mbp
        52
        2981405
        2853
        Genus species
        MEGAHIT-MetaBAT2-group-0.94
        49.9Kbp
        1.8Mbp
        52
        1809871
        1785
        Genus species
        MEGAHIT-MetaBAT2-group-0.95
        2.0Kbp
        0.5Mbp
        269
        545275
        578
        Genus species
        MEGAHIT-MetaBAT2-group-0.96
        3.3Kbp
        0.2Mbp
        68
        209844
        205
        Genus species
        MEGAHIT-MetaBAT2-group-0.97
        97.2Kbp
        3.0Mbp
        79
        3010636
        2781
        Genus species
        MEGAHIT-MetaBAT2-group-0.98
        17.9Kbp
        4.3Mbp
        385
        4331606
        4036
        Genus species
        MEGAHIT-MetaBAT2-group-0.99
        3.2Kbp
        0.8Mbp
        241
        805001
        789
        Genus species
        MEGAHIT-MetaBAT2-group-0.100
        2.9Kbp
        1.4Mbp
        510
        1417505
        1432
        Genus species
        MEGAHIT-group-0
        9.3Kbp
        442.2Mbp
        MEGAHIT-group-0-F1
        98.4%
        MEGAHIT-group-0-F2
        98.1%
        MEGAHIT-group-0-F3
        97.8%
        MEGAHIT-group-0-F4
        98.8%
        MEGAHIT-group-0-F5
        98.2%
        MEGAHIT-group-0-F6
        97.5%
        MEGAHIT-group-0-F7
        99.0%
        MEGAHIT-group-0-F8
        97.6%
        MEGAHIT-group-0-S1
        98.0%
        MEGAHIT-group-0-S2
        98.3%
        MEGAHIT-group-0-S3
        97.3%
        MEGAHIT-group-0-S5
        98.2%
        MEGAHIT-group-0-S6
        94.4%
        MEGAHIT-group-0-S7
        99.0%
        MEGAHIT-group-0-S8
        98.0%
        S1_run0
        1.9%
        100.0%
        3648.5Mb
        24.3M
        47.0%
        100.0%
        0.6%
        14.9%
        S1_run0_raw_1
        15.0%
        46.0%
        150bp
        150bp
        12.2M
        0%
        S1_run0_raw_2
        14.8%
        46.0%
        150bp
        150bp
        12.2M
        0%
        S1_run0_trimmed_1
        14.7%
        47.0%
        150bp
        150bp
        10.5M
        0%
        S1_run0_trimmed_2
        14.5%
        47.0%
        150bp
        150bp
        10.5M
        0%
        S2_run0
        2.1%
        100.0%
        3643.2Mb
        24.3M
        46.7%
        100.0%
        0.9%
        11.4%
        S2_run0_raw_1
        15.4%
        46.0%
        150bp
        150bp
        12.1M
        0%
        S2_run0_raw_2
        15.3%
        46.0%
        150bp
        150bp
        12.1M
        0%
        S2_run0_trimmed_1
        15.3%
        46.0%
        150bp
        150bp
        10.8M
        0%
        S2_run0_trimmed_2
        15.2%
        47.0%
        150bp
        150bp
        10.8M
        0%
        S3_run0
        2.3%
        100.0%
        3643.2Mb
        24.3M
        46.5%
        100.0%
        1.0%
        3.0%
        S3_run0_raw_1
        16.1%
        46.0%
        150bp
        150bp
        12.1M
        10%
        S3_run0_raw_2
        16.0%
        46.0%
        150bp
        150bp
        12.1M
        10%
        S3_run0_trimmed_1
        16.1%
        46.0%
        150bp
        150bp
        11.8M
        10%
        S3_run0_trimmed_2
        16.0%
        46.0%
        150bp
        150bp
        11.8M
        10%
        S5_run0
        1.7%
        100.0%
        3632.7Mb
        24.2M
        46.9%
        100.0%
        0.7%
        7.0%
        S5_run0_raw_1
        15.2%
        46.0%
        150bp
        150bp
        12.1M
        0%
        S5_run0_raw_2
        15.0%
        46.0%
        150bp
        150bp
        12.1M
        0%
        S5_run0_trimmed_1
        15.2%
        47.0%
        150bp
        150bp
        11.3M
        0%
        S5_run0_trimmed_2
        15.1%
        47.0%
        150bp
        150bp
        11.3M
        0%
        S6_run0
        2.3%
        100.0%
        3659.6Mb
        24.4M
        45.1%
        100.0%
        2.0%
        36.0%
        S6_run0_raw_1
        15.5%
        45.0%
        150bp
        150bp
        12.2M
        0%
        S6_run0_raw_2
        15.3%
        45.0%
        150bp
        150bp
        12.2M
        0%
        S6_run0_trimmed_1
        12.8%
        45.0%
        150bp
        150bp
        8.1M
        10%
        S6_run0_trimmed_2
        12.8%
        45.0%
        150bp
        150bp
        8.1M
        10%
        S7_run0
        1.5%
        100.0%
        3623.1Mb
        24.2M
        47.2%
        100.0%
        0.4%
        1.7%
        S7_run0_raw_1
        16.3%
        47.0%
        150bp
        150bp
        12.1M
        0%
        S7_run0_raw_2
        16.2%
        47.0%
        150bp
        150bp
        12.1M
        0%
        S7_run0_trimmed_1
        16.4%
        47.0%
        150bp
        150bp
        11.9M
        0%
        S7_run0_trimmed_2
        16.3%
        47.0%
        150bp
        150bp
        11.9M
        0%
        S8_run0
        1.2%
        100.0%
        3648.4Mb
        24.3M
        39.9%
        100.0%
        0.3%
        2.1%
        S8_run0_raw_1
        25.8%
        39.0%
        150bp
        150bp
        12.2M
        10%
        S8_run0_raw_2
        25.4%
        39.0%
        150bp
        150bp
        12.2M
        10%
        S8_run0_trimmed_1
        26.2%
        39.0%
        150bp
        150bp
        11.9M
        10%
        S8_run0_trimmed_2
        25.8%
        39.0%
        150bp
        150bp
        11.9M
        10%

        FastQC: raw reads

        Quality control tool for high throughput sequencing data.URL: http://www.bioinformatics.babraham.ac.uk/projects/fastqc

        Sequence Counts

        Sequence counts for each sample. Duplicate read counts are an estimate only.

        This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

        You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        Created with MultiQC

        Sequence Quality Histograms

        The mean quality value across each base position in the read.

        To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

        Taken from the FastQC help:

        The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

        Created with MultiQC

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality.

        From the FastQC help:

        The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

        Created with MultiQC

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called.

        To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

        To see the data as a line plot, as in the original FastQC graph, click on a sample track.

        From the FastQC help:

        Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

        In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

        It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

        From the FastQC help:

        This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

        In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

        An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

        Created with MultiQC

        Per Base N Content

        The percentage of base calls at each position for which an N was called.

        From the FastQC help:

        If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

        It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

        Created with MultiQC

        Sequence Length Distribution

        All samples have sequences of a single length (150bp)

        Sequence Duplication Levels

        The relative level of duplication found for every sequence.

        From the FastQC Help:

        In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (e.g. PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

        Created with MultiQC

        Overrepresented sequences by sample

        The total amount of overrepresented sequences found in each library.

        FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as overrepresented.

        Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

        From the FastQC Help:

        A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

        FastQC lists all the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

        30 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

        Note that only samples with ≥ 0.1% adapter contamination are shown.

        There may be several lines per sample, as one is shown for each adapter detected in the file.

        From the FastQC Help:

        The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

        Created with MultiQC

        Status Checks

        Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

        Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

        In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

        Created with MultiQC

        fastp

        All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).URL: https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

        Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

        Filtered Reads

        Filtering statistics of sampled reads.

        Created with MultiQC

        Insert Sizes

        Insert size estimation of sampled reads.

        Created with MultiQC

        Sequence Quality

        Average sequencing quality over each base of all reads.

        Created with MultiQC

        GC Content

        Average GC content over each base of all reads.

        Created with MultiQC

        N content

        Average N content over each base of all reads.

        Created with MultiQC


        FastQC: after preprocessing

        After trimming and, if requested, contamination removal.URL: http://www.bioinformatics.babraham.ac.uk/projects/fastqc

        Sequence Counts

        Sequence counts for each sample. Duplicate read counts are an estimate only.

        This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

        You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        Created with MultiQC

        Sequence Quality Histograms

        The mean quality value across each base position in the read.

        To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

        Taken from the FastQC help:

        The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

        Created with MultiQC

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality.

        From the FastQC help:

        The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

        Created with MultiQC

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called.

        To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

        To see the data as a line plot, as in the original FastQC graph, click on a sample track.

        From the FastQC help:

        Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

        In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

        It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

        From the FastQC help:

        This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

        In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

        An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

        Created with MultiQC

        Per Base N Content

        The percentage of base calls at each position for which an N was called.

        From the FastQC help:

        If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

        It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

        Created with MultiQC

        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help

        Created with MultiQC

        Sequence Duplication Levels

        The relative level of duplication found for every sequence.

        From the FastQC Help:

        In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (e.g. PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

        Created with MultiQC

        Overrepresented sequences by sample

        The total amount of overrepresented sequences found in each library.

        FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as overrepresented.

        Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

        From the FastQC Help:

        A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

        FastQC lists all the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

        30 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

        Note that only samples with ≥ 0.1% adapter contamination are shown.

        There may be several lines per sample, as one is shown for each adapter detected in the file.

        From the FastQC Help:

        The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

        Created with MultiQC

        Status Checks

        Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

        Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

        In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

        Created with MultiQC

        Bowtie2: host removal

        Mapping statistics of reads mapped against host genome and subsequently removed.URL: http://bowtie-bio.sourceforge.net/bowtie2; https://ccb.jhu.edu/software/hisat2DOI: 10.1038/nmeth.1923; 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4

        Paired-end alignments

        This plot shows the number of reads aligning to the reference in different ways.

        Please note that single mate alignment counts are halved to tally with pair counts properly.

        There are 6 possible types of alignment:

        • PE mapped uniquely: Pair has only one occurence in the reference genome.
        • PE mapped discordantly uniquely: Pair has only one occurence but not in proper pair.
        • PE one mate mapped uniquely: One read of a pair has one occurence.
        • PE multimapped: Pair has multiple occurence.
        • PE one mate multimapped: One read of a pair has multiple occurence.
        • PE neither mate aligned: Pair has no occurence.
        Created with MultiQC

        QUAST: assembly

        Assembly statistics of raw assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086

        Assembly Statistics

        Showing 1/1 rows and 6/6 columns.
        Sample NameN50 (Kbp)N75 (Kbp)L50 (K)L75 (K)Largest contig (Kbp)Length (Mbp)
        MEGAHIT-group-0
        9.3Kbp
        1.9Kbp
        6.5K
        36.6K
        853.6Kbp
        442.2Mbp

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Created with MultiQC

        Bowtie2: assembly

        Mapping statistics of reads mapped against assemblies.URL: http://bowtie-bio.sourceforge.net/bowtie2; https://ccb.jhu.edu/software/hisat2DOI: 10.1038/nmeth.1923; 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4

        Paired-end alignments

        This plot shows the number of reads aligning to the reference in different ways.

        Please note that single mate alignment counts are halved to tally with pair counts properly.

        There are 6 possible types of alignment:

        • PE mapped uniquely: Pair has only one occurence in the reference genome.
        • PE mapped discordantly uniquely: Pair has only one occurence but not in proper pair.
        • PE one mate mapped uniquely: One read of a pair has one occurence.
        • PE multimapped: Pair has multiple occurence.
        • PE one mate multimapped: One read of a pair has multiple occurence.
        • PE neither mate aligned: Pair has no occurence.
        Created with MultiQC

        QUAST: bins

        Assembly statistics of binned assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086

        Assembly Statistics

        Showing 267/267 rows and 6/6 columns.
        Sample NameN50 (Kbp)N75 (Kbp)L50 (K)L75 (K)Largest contig (Kbp)Length (Mbp)
        MEGAHIT-CONCOCT-group-0_0
        4.7Kbp
        1.8Kbp
        0.0K
        0.1K
        36.9Kbp
        0.4Mbp
        MEGAHIT-CONCOCT-group-0_1
        3.4Kbp
        1.5Kbp
        0.0K
        0.0K
        3.6Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_2
        73.4Kbp
        49.2Kbp
        0.0K
        0.0K
        192.2Kbp
        2.8Mbp
        MEGAHIT-CONCOCT-group-0_3
        291.9Kbp
        183.5Kbp
        0.0K
        0.0K
        660.3Kbp
        4.3Mbp
        MEGAHIT-CONCOCT-group-0_4
        3.4Kbp
        2.1Kbp
        0.2K
        0.5K
        28.4Kbp
        2.9Mbp
        MEGAHIT-CONCOCT-group-0_5
        4.0Kbp
        2.3Kbp
        0.3K
        0.6K
        23.4Kbp
        3.9Mbp
        MEGAHIT-CONCOCT-group-0_6
        31.3Kbp
        9.8Kbp
        0.0K
        0.1K
        170.2Kbp
        4.1Mbp
        MEGAHIT-CONCOCT-group-0_7
        1.2Kbp
        1.1Kbp
        0.1K
        0.2K
        3.9Kbp
        0.4Mbp
        MEGAHIT-CONCOCT-group-0_8
        2.1Kbp
        1.4Kbp
        0.1K
        0.2K
        23.0Kbp
        0.8Mbp
        MEGAHIT-CONCOCT-group-0_9
        1.6Kbp
        1.2Kbp
        0.1K
        0.2K
        14.3Kbp
        0.5Mbp
        MEGAHIT-CONCOCT-group-0_10
        16.9Kbp
        4.7Kbp
        0.0K
        0.1K
        114.5Kbp
        2.9Mbp
        MEGAHIT-CONCOCT-group-0_11
        1.7Kbp
        1.3Kbp
        0.4K
        0.8K
        7.1Kbp
        2.3Mbp
        MEGAHIT-CONCOCT-group-0_12
        11.0Kbp
        5.7Kbp
        0.2K
        0.6K
        106.5Kbp
        9.7Mbp
        MEGAHIT-CONCOCT-group-0_13
        44.6Kbp
        44.6Kbp
        0.0K
        0.0K
        44.6Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_14
        12.6Kbp
        6.0Kbp
        0.1K
        0.1K
        41.2Kbp
        2.4Mbp
        MEGAHIT-CONCOCT-group-0_15
        4.0Kbp
        3.3Kbp
        0.0K
        0.0K
        10.9Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_16
        1.6Kbp
        1.3Kbp
        0.3K
        0.5K
        9.8Kbp
        1.3Mbp
        MEGAHIT-CONCOCT-group-0_17
        1.8Kbp
        1.4Kbp
        0.8K
        1.5K
        8.6Kbp
        4.4Mbp
        MEGAHIT-CONCOCT-group-0_18
        14.2Kbp
        6.2Kbp
        0.0K
        0.0K
        43.4Kbp
        0.7Mbp
        MEGAHIT-CONCOCT-group-0_19
        15.7Kbp
        12.4Kbp
        0.0K
        0.0K
        16.2Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_20
        2.1Kbp
        1.4Kbp
        0.4K
        0.8K
        12.2Kbp
        2.6Mbp
        MEGAHIT-CONCOCT-group-0_21
        3.6Kbp
        1.9Kbp
        0.0K
        0.0K
        7.6Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_22
        9.1Kbp
        3.9Kbp
        0.0K
        0.1K
        55.4Kbp
        1.0Mbp
        MEGAHIT-CONCOCT-group-0_23
        2.8Kbp
        1.9Kbp
        0.0K
        0.0K
        11.6Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_24
        1.8Kbp
        1.3Kbp
        0.0K
        0.0K
        3.7Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_25
        2.0Kbp
        1.3Kbp
        0.0K
        0.0K
        4.6Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_26
        4.2Kbp
        2.1Kbp
        0.5K
        1.3K
        111.9Kbp
        9.9Mbp
        MEGAHIT-CONCOCT-group-0_28
        46.0Kbp
        16.2Kbp
        0.0K
        0.0K
        155.8Kbp
        3.0Mbp
        MEGAHIT-CONCOCT-group-0_29
        2.7Kbp
        1.6Kbp
        0.5K
        1.0K
        12.8Kbp
        4.1Mbp
        MEGAHIT-CONCOCT-group-0_30
        20.8Kbp
        7.4Kbp
        0.0K
        0.0K
        20.8Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_31
        1.1Kbp
        1.1Kbp
        0.0K
        0.0K
        1.2Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_32
        11.7Kbp
        4.3Kbp
        0.0K
        0.0K
        13.5Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_33
        63.2Kbp
        18.6Kbp
        0.0K
        0.0K
        370.0Kbp
        4.3Mbp
        MEGAHIT-CONCOCT-group-0_34
        3.6Kbp
        2.2Kbp
        0.4K
        0.8K
        72.1Kbp
        4.6Mbp
        MEGAHIT-CONCOCT-group-0_36
        7.7Kbp
        2.9Kbp
        0.0K
        0.1K
        174.2Kbp
        1.1Mbp
        MEGAHIT-CONCOCT-group-0_37
        2.0Kbp
        1.3Kbp
        0.2K
        0.4K
        33.7Kbp
        1.4Mbp
        MEGAHIT-CONCOCT-group-0_38
        12.0Kbp
        6.6Kbp
        0.1K
        0.1K
        44.3Kbp
        2.5Mbp
        MEGAHIT-CONCOCT-group-0_39
        17.2Kbp
        8.2Kbp
        0.1K
        0.2K
        107.0Kbp
        4.5Mbp
        MEGAHIT-CONCOCT-group-0_40
        1.9Kbp
        1.9Kbp
        0.0K
        0.0K
        1.9Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_42
        280.1Kbp
        130.7Kbp
        0.0K
        0.0K
        718.2Kbp
        4.9Mbp
        MEGAHIT-CONCOCT-group-0_43
        5.7Kbp
        2.9Kbp
        0.2K
        0.4K
        50.7Kbp
        3.7Mbp
        MEGAHIT-CONCOCT-group-0_44
        67.6Kbp
        37.0Kbp
        0.0K
        0.0K
        154.1Kbp
        4.6Mbp
        MEGAHIT-CONCOCT-group-0_45
        1.3Kbp
        1.3Kbp
        0.0K
        0.0K
        1.3Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_47
        3.3Kbp
        2.1Kbp
        0.1K
        0.2K
        21.7Kbp
        1.2Mbp
        MEGAHIT-CONCOCT-group-0_48
        280.0Kbp
        161.1Kbp
        0.0K
        0.0K
        616.6Kbp
        2.8Mbp
        MEGAHIT-CONCOCT-group-0_49
        2.6Kbp
        1.6Kbp
        0.1K
        0.2K
        44.3Kbp
        1.0Mbp
        MEGAHIT-CONCOCT-group-0_50
        4.1Kbp
        2.4Kbp
        0.1K
        0.2K
        27.2Kbp
        1.1Mbp
        MEGAHIT-CONCOCT-group-0_51
        3.0Kbp
        3.0Kbp
        0.0K
        0.0K
        3.0Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_52
        1.4Kbp
        1.2Kbp
        0.7K
        1.2K
        3.8Kbp
        2.6Mbp
        MEGAHIT-CONCOCT-group-0_53
        28.9Kbp
        17.1Kbp
        0.1K
        0.1K
        125.2Kbp
        5.4Mbp
        MEGAHIT-CONCOCT-group-0_54
        5.3Kbp
        2.3Kbp
        0.0K
        0.0K
        31.2Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_55
        7.8Kbp
        3.7Kbp
        0.1K
        0.3K
        51.1Kbp
        3.4Mbp
        MEGAHIT-CONCOCT-group-0_56
        39.1Kbp
        18.4Kbp
        0.0K
        0.0K
        190.6Kbp
        2.3Mbp
        MEGAHIT-CONCOCT-group-0_58
        19.2Kbp
        11.1Kbp
        0.1K
        0.2K
        104.1Kbp
        5.1Mbp
        MEGAHIT-CONCOCT-group-0_59
        4.5Kbp
        1.8Kbp
        0.1K
        0.3K
        36.4Kbp
        1.8Mbp
        MEGAHIT-CONCOCT-group-0_60
        289.4Kbp
        164.5Kbp
        0.0K
        0.0K
        409.3Kbp
        1.9Mbp
        MEGAHIT-CONCOCT-group-0_61
        12.4Kbp
        6.5Kbp
        0.1K
        0.2K
        55.4Kbp
        4.5Mbp
        MEGAHIT-CONCOCT-group-0_62
        104.9Kbp
        50.6Kbp
        0.0K
        0.0K
        261.5Kbp
        2.7Mbp
        MEGAHIT-CONCOCT-group-0_63
        92.6Kbp
        28.9Kbp
        0.0K
        0.0K
        352.2Kbp
        2.7Mbp
        MEGAHIT-CONCOCT-group-0_64
        1.8Kbp
        1.3Kbp
        0.3K
        0.5K
        8.9Kbp
        1.4Mbp
        MEGAHIT-CONCOCT-group-0_65
        31.3Kbp
        31.3Kbp
        0.0K
        0.0K
        31.3Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_66
        15.5Kbp
        9.0Kbp
        0.1K
        0.1K
        105.8Kbp
        2.8Mbp
        MEGAHIT-CONCOCT-group-0_67
        3.0Kbp
        1.4Kbp
        0.0K
        0.0K
        10.6Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_68
        8.2Kbp
        4.6Kbp
        0.2K
        0.3K
        45.3Kbp
        4.0Mbp
        MEGAHIT-CONCOCT-group-0_69
        327.5Kbp
        150.8Kbp
        0.0K
        0.0K
        653.4Kbp
        3.6Mbp
        MEGAHIT-CONCOCT-group-0_70
        10.1Kbp
        2.8Kbp
        0.0K
        0.1K
        39.5Kbp
        0.7Mbp
        MEGAHIT-CONCOCT-group-0_72
        7.4Kbp
        3.3Kbp
        0.0K
        0.0K
        49.0Kbp
        0.5Mbp
        MEGAHIT-CONCOCT-group-0_73
        2.0Kbp
        1.3Kbp
        0.2K
        0.5K
        41.7Kbp
        1.7Mbp
        MEGAHIT-CONCOCT-group-0_74
        32.0Kbp
        13.9Kbp
        0.0K
        0.1K
        190.7Kbp
        4.1Mbp
        MEGAHIT-CONCOCT-group-0_75
        17.3Kbp
        9.3Kbp
        0.1K
        0.2K
        78.5Kbp
        4.6Mbp
        MEGAHIT-CONCOCT-group-0_76
        1.7Kbp
        1.2Kbp
        0.1K
        0.3K
        61.8Kbp
        1.0Mbp
        MEGAHIT-CONCOCT-group-0_77
        1.4Kbp
        1.1Kbp
        0.2K
        0.4K
        7.7Kbp
        0.8Mbp
        MEGAHIT-CONCOCT-group-0_78
        1.4Kbp
        1.2Kbp
        0.3K
        0.6K
        24.1Kbp
        1.3Mbp
        MEGAHIT-CONCOCT-group-0_79
        3.8Kbp
        1.6Kbp
        0.1K
        0.2K
        53.3Kbp
        1.0Mbp
        MEGAHIT-CONCOCT-group-0_80
        9.2Kbp
        6.2Kbp
        0.0K
        0.0K
        24.2Kbp
        0.2Mbp
        MEGAHIT-CONCOCT-group-0_81
        2.0Kbp
        1.4Kbp
        0.0K
        0.0K
        2.8Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_82
        3.7Kbp
        1.6Kbp
        0.5K
        1.6K
        80.6Kbp
        9.6Mbp
        MEGAHIT-CONCOCT-group-0_83
        247.4Kbp
        140.0Kbp
        0.0K
        0.0K
        520.5Kbp
        3.3Mbp
        MEGAHIT-CONCOCT-group-0_85
        124.9Kbp
        25.7Kbp
        0.0K
        0.0K
        473.6Kbp
        3.6Mbp
        MEGAHIT-CONCOCT-group-0_86
        4.9Kbp
        2.2Kbp
        0.0K
        0.0K
        8.8Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_87
        122.6Kbp
        99.8Kbp
        0.0K
        0.0K
        358.1Kbp
        3.7Mbp
        MEGAHIT-CONCOCT-group-0_88
        25.9Kbp
        14.6Kbp
        0.1K
        0.2K
        147.4Kbp
        9.4Mbp
        MEGAHIT-CONCOCT-group-0_89
        2.0Kbp
        1.4Kbp
        0.6K
        1.0K
        7.5Kbp
        3.3Mbp
        MEGAHIT-CONCOCT-group-0_90
        44.5Kbp
        7.7Kbp
        0.0K
        0.0K
        44.5Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_91
        1.7Kbp
        1.3Kbp
        1.4K
        2.5K
        8.4Kbp
        6.6Mbp
        MEGAHIT-CONCOCT-group-0_92
        6.1Kbp
        3.8Kbp
        0.1K
        0.1K
        21.6Kbp
        1.4Mbp
        MEGAHIT-CONCOCT-group-0_93
        18.0Kbp
        9.0Kbp
        0.0K
        0.0K
        28.9Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_94
        10.3Kbp
        7.4Kbp
        0.0K
        0.0K
        39.4Kbp
        0.6Mbp
        MEGAHIT-CONCOCT-group-0_95
        80.9Kbp
        42.8Kbp
        0.0K
        0.0K
        299.2Kbp
        3.4Mbp
        MEGAHIT-CONCOCT-group-0_97
        41.8Kbp
        27.0Kbp
        0.0K
        0.0K
        202.8Kbp
        2.8Mbp
        MEGAHIT-CONCOCT-group-0_99
        5.8Kbp
        2.5Kbp
        0.0K
        0.1K
        52.7Kbp
        0.8Mbp
        MEGAHIT-CONCOCT-group-0_100
        4.7Kbp
        2.0Kbp
        0.0K
        0.1K
        52.5Kbp
        0.7Mbp
        MEGAHIT-CONCOCT-group-0_101
        47.8Kbp
        17.1Kbp
        0.0K
        0.0K
        143.2Kbp
        2.8Mbp
        MEGAHIT-CONCOCT-group-0_102
        2.0Kbp
        1.4Kbp
        1.5K
        3.0K
        15.1Kbp
        9.8Mbp
        MEGAHIT-CONCOCT-group-0_103
        2.3Kbp
        1.5Kbp
        0.0K
        0.0K
        6.5Kbp
        0.1Mbp
        MEGAHIT-CONCOCT-group-0_104
        2.2Kbp
        2.2Kbp
        0.0K
        0.0K
        2.2Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_105
        7.8Kbp
        4.1Kbp
        0.1K
        0.3K
        56.6Kbp
        3.2Mbp
        MEGAHIT-CONCOCT-group-0_106
        1.6Kbp
        1.1Kbp
        0.0K
        0.0K
        1.6Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_107
        51.9Kbp
        35.8Kbp
        0.0K
        0.0K
        207.4Kbp
        2.5Mbp
        MEGAHIT-CONCOCT-group-0_108
        8.9Kbp
        3.7Kbp
        0.0K
        0.0K
        31.4Kbp
        0.6Mbp
        MEGAHIT-CONCOCT-group-0_109
        1.3Kbp
        1.2Kbp
        0.0K
        0.0K
        1.6Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_110
        12.1Kbp
        12.1Kbp
        0.0K
        0.0K
        12.1Kbp
        0.0Mbp
        MEGAHIT-CONCOCT-group-0_111
        27.6Kbp
        14.2Kbp
        0.1K
        0.1K
        156.9Kbp
        4.8Mbp
        MEGAHIT-CONCOCT-group-0_112
        46.6Kbp
        27.7Kbp
        0.0K
        0.0K
        243.5Kbp
        2.1Mbp
        MEGAHIT-CONCOCT-group-0_113
        195.6Kbp
        195.6Kbp
        0.0K
        0.0K
        195.6Kbp
        0.2Mbp
        MEGAHIT-CONCOCT-group-0_114
        3.1Kbp
        1.9Kbp
        0.4K
        0.8K
        24.7Kbp
        3.8Mbp
        MEGAHIT-MaxBin2-group-0.001
        7.3Kbp
        3.4Kbp
        0.0K
        0.0K
        25.9Kbp
        0.3Mbp
        MEGAHIT-MaxBin2-group-0.002
        40.9Kbp
        20.1Kbp
        0.0K
        0.0K
        170.2Kbp
        3.0Mbp
        MEGAHIT-MaxBin2-group-0.003
        6.2Kbp
        3.2Kbp
        0.0K
        0.1K
        48.2Kbp
        0.8Mbp
        MEGAHIT-MaxBin2-group-0.004
        47.8Kbp
        17.1Kbp
        0.0K
        0.0K
        143.2Kbp
        2.9Mbp
        MEGAHIT-MaxBin2-group-0.005
        289.4Kbp
        73.0Kbp
        0.0K
        0.0K
        409.3Kbp
        2.1Mbp
        MEGAHIT-MaxBin2-group-0.006
        53.4Kbp
        22.9Kbp
        0.0K
        0.0K
        155.8Kbp
        2.7Mbp
        MEGAHIT-MaxBin2-group-0.007
        16.1Kbp
        7.7Kbp
        0.1K
        0.2K
        107.0Kbp
        5.0Mbp
        MEGAHIT-MaxBin2-group-0.008
        105.0Kbp
        105.0Kbp
        0.0K
        0.0K
        105.0Kbp
        0.1Mbp
        MEGAHIT-MaxBin2-group-0.009
        38.3Kbp
        17.6Kbp
        0.0K
        0.0K
        190.6Kbp
        2.4Mbp
        MEGAHIT-MaxBin2-group-0.010
        27.0Kbp
        14.2Kbp
        0.1K
        0.1K
        156.9Kbp
        4.6Mbp
        MEGAHIT-MaxBin2-group-0.011
        85.7Kbp
        37.9Kbp
        0.0K
        0.0K
        261.5Kbp
        2.9Mbp
        MEGAHIT-MaxBin2-group-0.012
        257.3Kbp
        96.1Kbp
        0.0K
        0.0K
        616.6Kbp
        3.2Mbp
        MEGAHIT-MaxBin2-group-0.013
        41.1Kbp
        17.4Kbp
        0.0K
        0.0K
        243.5Kbp
        2.2Mbp
        MEGAHIT-MaxBin2-group-0.015
        12.5Kbp
        6.3Kbp
        0.1K
        0.3K
        55.4Kbp
        5.1Mbp
        MEGAHIT-MaxBin2-group-0.016
        8.2Kbp
        6.2Kbp
        0.0K
        0.0K
        26.5Kbp
        0.1Mbp
        MEGAHIT-MaxBin2-group-0.017
        7.9Kbp
        4.2Kbp
        0.1K
        0.2K
        56.6Kbp
        2.9Mbp
        MEGAHIT-MaxBin2-group-0.018
        9.5Kbp
        4.4Kbp
        0.0K
        0.0K
        55.4Kbp
        0.7Mbp
        MEGAHIT-MaxBin2-group-0.021
        5.9Kbp
        2.0Kbp
        0.0K
        0.1K
        49.0Kbp
        0.8Mbp
        MEGAHIT-MaxBin2-group-0.023
        15.2Kbp
        6.5Kbp
        0.1K
        0.2K
        78.5Kbp
        5.3Mbp
        MEGAHIT-MaxBin2-group-0.024
        11.1Kbp
        3.1Kbp
        0.1K
        0.2K
        126.6Kbp
        3.4Mbp
        MEGAHIT-MaxBin2-group-0.025
        59.2Kbp
        36.7Kbp
        0.0K
        0.0K
        207.4Kbp
        2.6Mbp
        MEGAHIT-MaxBin2-group-0.026
        2.3Kbp
        1.5Kbp
        0.3K
        0.8K
        25.4Kbp
        3.2Mbp
        MEGAHIT-MaxBin2-group-0.027
        2.4Kbp
        1.5Kbp
        0.7K
        1.4K
        33.7Kbp
        5.7Mbp
        MEGAHIT-MaxBin2-group-0.028
        4.7Kbp
        2.3Kbp
        0.0K
        0.1K
        28.0Kbp
        0.8Mbp
        MEGAHIT-MaxBin2-group-0.029
        2.1Kbp
        1.5Kbp
        0.7K
        1.3K
        104.1Kbp
        4.6Mbp
        MEGAHIT-MaxBin2-group-0.030
        26.3Kbp
        11.5Kbp
        0.0K
        0.1K
        190.7Kbp
        4.5Mbp
        MEGAHIT-MaxBin2-group-0.032
        3.4Kbp
        1.8Kbp
        0.4K
        1.1K
        50.7Kbp
        6.4Mbp
        MEGAHIT-MaxBin2-group-0.033
        28.4Kbp
        14.8Kbp
        0.1K
        0.1K
        195.6Kbp
        6.1Mbp
        MEGAHIT-MaxBin2-group-0.034
        64.9Kbp
        33.0Kbp
        0.0K
        0.1K
        154.1Kbp
        4.8Mbp
        MEGAHIT-MaxBin2-group-0.035
        14.0Kbp
        7.9Kbp
        0.1K
        0.1K
        105.8Kbp
        3.0Mbp
        MEGAHIT-MaxBin2-group-0.036
        69.5Kbp
        23.1Kbp
        0.0K
        0.0K
        352.2Kbp
        2.9Mbp
        MEGAHIT-MaxBin2-group-0.037
        11.4Kbp
        7.4Kbp
        0.0K
        0.0K
        31.4Kbp
        0.1Mbp
        MEGAHIT-MaxBin2-group-0.038
        3.4Kbp
        1.9Kbp
        0.3K
        0.8K
        68.7Kbp
        4.4Mbp
        MEGAHIT-MaxBin2-group-0.039
        3.5Kbp
        2.1Kbp
        0.7K
        1.4K
        72.1Kbp
        8.0Mbp
        MEGAHIT-MaxBin2-group-0.040
        2.1Kbp
        1.3Kbp
        0.5K
        1.4K
        44.3Kbp
        6.2Mbp
        MEGAHIT-MaxBin2-group-0.041
        3.2Kbp
        1.8Kbp
        0.5K
        1.1K
        24.7Kbp
        5.8Mbp
        MEGAHIT-MaxBin2-group-0.042
        122.6Kbp
        99.8Kbp
        0.0K
        0.0K
        358.1Kbp
        3.8Mbp
        MEGAHIT-MaxBin2-group-0.044
        41.0Kbp
        24.4Kbp
        0.0K
        0.0K
        202.8Kbp
        3.0Mbp
        MEGAHIT-MaxBin2-group-0.045
        12.7Kbp
        6.4Kbp
        0.1K
        0.1K
        41.2Kbp
        2.4Mbp
        MEGAHIT-MaxBin2-group-0.046
        81.2Kbp
        53.9Kbp
        0.0K
        0.0K
        299.2Kbp
        3.3Mbp
        MEGAHIT-MaxBin2-group-0.048
        327.5Kbp
        98.8Kbp
        0.0K
        0.0K
        653.4Kbp
        2.5Mbp
        MEGAHIT-MaxBin2-group-0.049
        4.4Kbp
        1.9Kbp
        0.2K
        0.6K
        53.0Kbp
        4.6Mbp
        MEGAHIT-MaxBin2-group-0.050
        1.8Kbp
        1.3Kbp
        1.4K
        2.6K
        22.6Kbp
        7.6Mbp
        MEGAHIT-MaxBin2-group-0.051
        291.9Kbp
        183.5Kbp
        0.0K
        0.0K
        660.3Kbp
        4.4Mbp
        MEGAHIT-MaxBin2-group-0.052
        601.8Kbp
        601.8Kbp
        0.0K
        0.0K
        601.8Kbp
        0.8Mbp
        MEGAHIT-MaxBin2-group-0.053
        124.9Kbp
        25.7Kbp
        0.0K
        0.0K
        473.6Kbp
        3.6Mbp
        MEGAHIT-MaxBin2-group-0.054
        4.6Kbp
        2.0Kbp
        0.3K
        0.9K
        81.6Kbp
        7.3Mbp
        MEGAHIT-MaxBin2-group-0.055
        36.3Kbp
        8.8Kbp
        0.0K
        0.1K
        192.2Kbp
        5.5Mbp
        MEGAHIT-MaxBin2-group-0.056
        8.3Kbp
        2.4Kbp
        0.2K
        0.7K
        94.3Kbp
        8.1Mbp
        MEGAHIT-MaxBin2-group-0.057
        19.3Kbp
        10.1Kbp
        0.1K
        0.2K
        66.5Kbp
        5.0Mbp
        MEGAHIT-MaxBin2-group-0.058
        4.5Kbp
        2.0Kbp
        0.2K
        0.5K
        111.9Kbp
        3.7Mbp
        MEGAHIT-MaxBin2-group-0.059
        269.4Kbp
        269.4Kbp
        0.0K
        0.0K
        269.4Kbp
        0.3Mbp
        MEGAHIT-MaxBin2-group-0.060
        2.1Kbp
        1.5Kbp
        1.2K
        2.5K
        44.3Kbp
        8.6Mbp
        MEGAHIT-MaxBin2-group-0.061
        1.9Kbp
        1.4Kbp
        0.6K
        1.1K
        13.3Kbp
        3.6Mbp
        MEGAHIT-MaxBin2-group-0.063
        1.5Kbp
        1.2Kbp
        0.5K
        0.8K
        7.6Kbp
        1.9Mbp
        MEGAHIT-MaxBin2-group-0.064
        93.0Kbp
        45.5Kbp
        0.0K
        0.0K
        370.0Kbp
        3.1Mbp
        MEGAHIT-MaxBin2-group-0.065
        280.1Kbp
        130.7Kbp
        0.0K
        0.0K
        718.2Kbp
        5.0Mbp
        MEGAHIT-MaxBin2-group-0.066
        1.8Kbp
        1.3Kbp
        0.9K
        1.7K
        143.7Kbp
        5.2Mbp
        MEGAHIT-MaxBin2-group-0.067
        247.4Kbp
        134.3Kbp
        0.0K
        0.0K
        520.5Kbp
        3.4Mbp
        MEGAHIT-MaxBin2-group-0.068
        36.3Kbp
        18.8Kbp
        0.0K
        0.1K
        147.4Kbp
        4.5Mbp
        MEGAHIT-MaxBin2-group-0.069
        8.1Kbp
        4.2Kbp
        0.1K
        0.3K
        46.4Kbp
        3.9Mbp
        MEGAHIT-MaxBin2-group-0.070
        1.7Kbp
        1.3Kbp
        0.4K
        0.8K
        7.1Kbp
        2.2Mbp
        MEGAHIT-MaxBin2-group-0.071
        1.8Kbp
        1.3Kbp
        0.4K
        0.7K
        55.6Kbp
        2.4Mbp
        MEGAHIT-MaxBin2-group-0.072
        15.2Kbp
        9.1Kbp
        0.1K
        0.1K
        93.4Kbp
        3.0Mbp
        MEGAHIT-MaxBin2-group-0.073
        2.6Kbp
        1.7Kbp
        0.4K
        0.7K
        11.4Kbp
        2.9Mbp
        MEGAHIT-MaxBin2-group-0.074
        9.3Kbp
        5.2Kbp
        0.1K
        0.2K
        42.8Kbp
        3.4Mbp
        MEGAHIT-MaxBin2-group-0.075
        16.8Kbp
        8.1Kbp
        0.1K
        0.1K
        65.2Kbp
        2.9Mbp
        MEGAHIT-MetaBAT2-group-0.1
        289.4Kbp
        289.4Kbp
        0.0K
        0.0K
        289.4Kbp
        0.4Mbp
        MEGAHIT-MetaBAT2-group-0.2
        8.4Kbp
        3.5Kbp
        0.0K
        0.1K
        39.5Kbp
        0.6Mbp
        MEGAHIT-MetaBAT2-group-0.3
        195.6Kbp
        195.6Kbp
        0.0K
        0.0K
        195.6Kbp
        0.2Mbp
        MEGAHIT-MetaBAT2-group-0.4
        5.8Kbp
        4.0Kbp
        0.0K
        0.1K
        72.1Kbp
        0.8Mbp
        MEGAHIT-MetaBAT2-group-0.5
        7.1Kbp
        4.6Kbp
        0.0K
        0.0K
        25.7Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.6
        59.2Kbp
        38.3Kbp
        0.0K
        0.0K
        207.4Kbp
        2.4Mbp
        MEGAHIT-MetaBAT2-group-0.7
        2.2Kbp
        1.8Kbp
        0.7K
        1.2K
        19.2Kbp
        4.3Mbp
        MEGAHIT-MetaBAT2-group-0.8
        6.1Kbp
        3.1Kbp
        0.0K
        0.0K
        28.9Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.9
        3.4Kbp
        2.4Kbp
        0.2K
        0.4K
        11.4Kbp
        2.1Mbp
        MEGAHIT-MetaBAT2-group-0.10
        3.2Kbp
        2.4Kbp
        0.0K
        0.1K
        11.6Kbp
        0.4Mbp
        MEGAHIT-MetaBAT2-group-0.11
        104.9Kbp
        50.6Kbp
        0.0K
        0.0K
        261.5Kbp
        2.6Mbp
        MEGAHIT-MetaBAT2-group-0.12
        8.5Kbp
        4.9Kbp
        0.2K
        0.3K
        61.5Kbp
        4.5Mbp
        MEGAHIT-MetaBAT2-group-0.13
        55.8Kbp
        40.5Kbp
        0.0K
        0.0K
        143.2Kbp
        0.9Mbp
        MEGAHIT-MetaBAT2-group-0.14
        4.9Kbp
        3.4Kbp
        0.1K
        0.3K
        22.7Kbp
        2.0Mbp
        MEGAHIT-MetaBAT2-group-0.15
        8.3Kbp
        4.4Kbp
        0.1K
        0.2K
        50.7Kbp
        2.4Mbp
        MEGAHIT-MetaBAT2-group-0.16
        13.0Kbp
        6.9Kbp
        0.1K
        0.2K
        55.4Kbp
        3.9Mbp
        MEGAHIT-MetaBAT2-group-0.17
        3.4Kbp
        2.3Kbp
        0.2K
        0.4K
        16.2Kbp
        2.2Mbp
        MEGAHIT-MetaBAT2-group-0.18
        122.6Kbp
        99.8Kbp
        0.0K
        0.0K
        358.1Kbp
        3.6Mbp
        MEGAHIT-MetaBAT2-group-0.19
        61.4Kbp
        32.4Kbp
        0.0K
        0.0K
        155.8Kbp
        2.4Mbp
        MEGAHIT-MetaBAT2-group-0.20
        5.7Kbp
        3.6Kbp
        0.1K
        0.3K
        29.4Kbp
        2.7Mbp
        MEGAHIT-MetaBAT2-group-0.21
        303.9Kbp
        145.5Kbp
        0.0K
        0.0K
        718.2Kbp
        4.7Mbp
        MEGAHIT-MetaBAT2-group-0.22
        40.4Kbp
        25.2Kbp
        0.0K
        0.0K
        102.3Kbp
        2.2Mbp
        MEGAHIT-MetaBAT2-group-0.23
        52.7Kbp
        26.1Kbp
        0.0K
        0.0K
        190.6Kbp
        1.9Mbp
        MEGAHIT-MetaBAT2-group-0.24
        41.8Kbp
        25.8Kbp
        0.0K
        0.0K
        202.8Kbp
        2.9Mbp
        MEGAHIT-MetaBAT2-group-0.25
        4.1Kbp
        3.1Kbp
        0.0K
        0.1K
        13.6Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.26
        81.2Kbp
        56.4Kbp
        0.0K
        0.0K
        299.2Kbp
        3.2Mbp
        MEGAHIT-MetaBAT2-group-0.27
        5.2Kbp
        3.0Kbp
        0.0K
        0.0K
        37.2Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.28
        9.0Kbp
        5.3Kbp
        0.1K
        0.3K
        53.0Kbp
        4.0Mbp
        MEGAHIT-MetaBAT2-group-0.29
        4.4Kbp
        3.0Kbp
        0.0K
        0.1K
        12.2Kbp
        0.4Mbp
        MEGAHIT-MetaBAT2-group-0.30
        27.4Kbp
        14.5Kbp
        0.1K
        0.1K
        115.7Kbp
        5.7Mbp
        MEGAHIT-MetaBAT2-group-0.31
        17.5Kbp
        8.3Kbp
        0.1K
        0.2K
        94.3Kbp
        5.4Mbp
        MEGAHIT-MetaBAT2-group-0.33
        3.0Kbp
        2.2Kbp
        0.1K
        0.2K
        16.2Kbp
        0.9Mbp
        MEGAHIT-MetaBAT2-group-0.34
        37.8Kbp
        21.7Kbp
        0.0K
        0.1K
        147.4Kbp
        4.0Mbp
        MEGAHIT-MetaBAT2-group-0.35
        3.1Kbp
        2.2Kbp
        0.1K
        0.3K
        24.2Kbp
        1.4Mbp
        MEGAHIT-MetaBAT2-group-0.36
        299.8Kbp
        204.9Kbp
        0.0K
        0.0K
        660.3Kbp
        3.9Mbp
        MEGAHIT-MetaBAT2-group-0.37
        10.9Kbp
        5.4Kbp
        0.2K
        0.4K
        65.2Kbp
        6.2Mbp
        MEGAHIT-MetaBAT2-group-0.40
        5.1Kbp
        3.3Kbp
        0.2K
        0.4K
        24.7Kbp
        3.3Mbp
        MEGAHIT-MetaBAT2-group-0.41
        10.5Kbp
        5.3Kbp
        0.1K
        0.1K
        56.6Kbp
        2.3Mbp
        MEGAHIT-MetaBAT2-group-0.42
        55.0Kbp
        25.1Kbp
        0.0K
        0.0K
        139.4Kbp
        1.1Mbp
        MEGAHIT-MetaBAT2-group-0.44
        15.3Kbp
        5.6Kbp
        0.0K
        0.0K
        30.9Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.45
        17.0Kbp
        8.5Kbp
        0.1K
        0.1K
        107.0Kbp
        3.7Mbp
        MEGAHIT-MetaBAT2-group-0.46
        32.9Kbp
        15.7Kbp
        0.0K
        0.1K
        87.6Kbp
        3.7Mbp
        MEGAHIT-MetaBAT2-group-0.47
        15.3Kbp
        9.6Kbp
        0.1K
        0.1K
        93.4Kbp
        2.9Mbp
        MEGAHIT-MetaBAT2-group-0.48
        35.9Kbp
        34.9Kbp
        0.0K
        0.0K
        110.2Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.49
        3.1Kbp
        2.3Kbp
        0.1K
        0.1K
        8.7Kbp
        0.6Mbp
        MEGAHIT-MetaBAT2-group-0.50
        29.6Kbp
        16.1Kbp
        0.0K
        0.1K
        156.9Kbp
        3.6Mbp
        MEGAHIT-MetaBAT2-group-0.51
        68.5Kbp
        39.8Kbp
        0.0K
        0.0K
        154.1Kbp
        4.5Mbp
        MEGAHIT-MetaBAT2-group-0.52
        15.9Kbp
        9.4Kbp
        0.1K
        0.1K
        105.8Kbp
        2.7Mbp
        MEGAHIT-MetaBAT2-group-0.53
        8.5Kbp
        3.5Kbp
        0.1K
        0.1K
        106.5Kbp
        1.9Mbp
        MEGAHIT-MetaBAT2-group-0.54
        13.3Kbp
        5.7Kbp
        0.1K
        0.2K
        81.6Kbp
        4.1Mbp
        MEGAHIT-MetaBAT2-group-0.55
        3.3Kbp
        2.3Kbp
        0.1K
        0.2K
        30.5Kbp
        1.2Mbp
        MEGAHIT-MetaBAT2-group-0.56
        2.0Kbp
        1.7Kbp
        0.2K
        0.3K
        7.6Kbp
        0.9Mbp
        MEGAHIT-MetaBAT2-group-0.57
        14.8Kbp
        7.4Kbp
        0.1K
        0.1K
        41.2Kbp
        2.2Mbp
        MEGAHIT-MetaBAT2-group-0.58
        3.8Kbp
        2.6Kbp
        0.2K
        0.4K
        28.0Kbp
        2.6Mbp
        MEGAHIT-MetaBAT2-group-0.59
        3.7Kbp
        2.7Kbp
        0.0K
        0.0K
        8.8Kbp
        0.2Mbp
        MEGAHIT-MetaBAT2-group-0.60
        44.2Kbp
        23.0Kbp
        0.0K
        0.0K
        170.2Kbp
        2.8Mbp
        MEGAHIT-MetaBAT2-group-0.61
        2.2Kbp
        1.8Kbp
        0.2K
        0.3K
        5.8Kbp
        1.1Mbp
        MEGAHIT-MetaBAT2-group-0.63
        3.4Kbp
        2.3Kbp
        0.8K
        1.5K
        21.4Kbp
        8.0Mbp
        MEGAHIT-MetaBAT2-group-0.64
        247.4Kbp
        140.0Kbp
        0.0K
        0.0K
        520.5Kbp
        3.3Mbp
        MEGAHIT-MetaBAT2-group-0.65
        355.2Kbp
        164.5Kbp
        0.0K
        0.0K
        409.3Kbp
        1.4Mbp
        MEGAHIT-MetaBAT2-group-0.66
        73.4Kbp
        55.7Kbp
        0.0K
        0.0K
        192.2Kbp
        2.1Mbp
        MEGAHIT-MetaBAT2-group-0.67
        67.2Kbp
        43.7Kbp
        0.0K
        0.0K
        151.4Kbp
        0.7Mbp
        MEGAHIT-MetaBAT2-group-0.69
        59.2Kbp
        54.5Kbp
        0.0K
        0.0K
        126.6Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.70
        26.5Kbp
        7.8Kbp
        0.0K
        0.0K
        48.2Kbp
        0.4Mbp
        MEGAHIT-MetaBAT2-group-0.71
        6.8Kbp
        4.2Kbp
        0.4K
        0.8K
        45.3Kbp
        8.5Mbp
        MEGAHIT-MetaBAT2-group-0.72
        12.1Kbp
        7.0Kbp
        0.1K
        0.1K
        44.3Kbp
        2.5Mbp
        MEGAHIT-MetaBAT2-group-0.73
        5.0Kbp
        3.3Kbp
        0.1K
        0.2K
        28.4Kbp
        2.0Mbp
        MEGAHIT-MetaBAT2-group-0.74
        14.3Kbp
        6.0Kbp
        0.0K
        0.0K
        39.1Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.75
        2.6Kbp
        2.0Kbp
        0.1K
        0.2K
        41.7Kbp
        1.1Mbp
        MEGAHIT-MetaBAT2-group-0.76
        8.9Kbp
        4.8Kbp
        0.1K
        0.3K
        55.6Kbp
        4.2Mbp
        MEGAHIT-MetaBAT2-group-0.77
        259.1Kbp
        259.1Kbp
        0.0K
        0.0K
        259.1Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.78
        280.0Kbp
        161.1Kbp
        0.0K
        0.0K
        616.6Kbp
        2.8Mbp
        MEGAHIT-MetaBAT2-group-0.79
        3.3Kbp
        2.5Kbp
        0.0K
        0.1K
        9.6Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.80
        327.5Kbp
        150.8Kbp
        0.0K
        0.0K
        653.4Kbp
        3.5Mbp
        MEGAHIT-MetaBAT2-group-0.81
        119.8Kbp
        52.7Kbp
        0.0K
        0.0K
        119.8Kbp
        0.2Mbp
        MEGAHIT-MetaBAT2-group-0.82
        92.6Kbp
        38.6Kbp
        0.0K
        0.0K
        352.2Kbp
        2.5Mbp
        MEGAHIT-MetaBAT2-group-0.83
        2.9Kbp
        2.1Kbp
        0.2K
        0.4K
        31.2Kbp
        1.7Mbp
        MEGAHIT-MetaBAT2-group-0.84
        3.6Kbp
        2.6Kbp
        0.1K
        0.1K
        16.6Kbp
        0.7Mbp
        MEGAHIT-MetaBAT2-group-0.85
        19.2Kbp
        17.8Kbp
        0.0K
        0.0K
        52.4Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.86
        190.7Kbp
        190.7Kbp
        0.0K
        0.0K
        190.7Kbp
        0.2Mbp
        MEGAHIT-MetaBAT2-group-0.87
        14.1Kbp
        6.0Kbp
        0.0K
        0.0K
        55.4Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.88
        20.4Kbp
        11.5Kbp
        0.1K
        0.2K
        82.4Kbp
        5.5Mbp
        MEGAHIT-MetaBAT2-group-0.89
        3.4Kbp
        2.6Kbp
        0.2K
        0.3K
        12.7Kbp
        1.6Mbp
        MEGAHIT-MetaBAT2-group-0.90
        3.7Kbp
        2.5Kbp
        0.0K
        0.1K
        12.0Kbp
        0.3Mbp
        MEGAHIT-MetaBAT2-group-0.91
        18.7Kbp
        5.9Kbp
        0.0K
        0.0K
        55.9Kbp
        0.9Mbp
        MEGAHIT-MetaBAT2-group-0.92
        4.4Kbp
        2.7Kbp
        0.0K
        0.1K
        17.2Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.93
        162.5Kbp
        89.3Kbp
        0.0K
        0.0K
        473.6Kbp
        3.0Mbp
        MEGAHIT-MetaBAT2-group-0.94
        49.9Kbp
        33.9Kbp
        0.0K
        0.0K
        243.5Kbp
        1.8Mbp
        MEGAHIT-MetaBAT2-group-0.95
        2.0Kbp
        1.7Kbp
        0.1K
        0.2K
        5.0Kbp
        0.5Mbp
        MEGAHIT-MetaBAT2-group-0.96
        3.3Kbp
        2.5Kbp
        0.0K
        0.0K
        6.7Kbp
        0.2Mbp
        MEGAHIT-MetaBAT2-group-0.97
        97.2Kbp
        49.7Kbp
        0.0K
        0.0K
        370.0Kbp
        3.0Mbp
        MEGAHIT-MetaBAT2-group-0.98
        17.9Kbp
        9.8Kbp
        0.1K
        0.2K
        78.5Kbp
        4.3Mbp
        MEGAHIT-MetaBAT2-group-0.99
        3.2Kbp
        2.4Kbp
        0.1K
        0.1K
        143.7Kbp
        0.8Mbp
        MEGAHIT-MetaBAT2-group-0.100
        2.9Kbp
        2.3Kbp
        0.2K
        0.3K
        7.5Kbp
        1.4Mbp

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Created with MultiQC

        CheckM

        Estimates genome completeness and contamination based on the presence or absence of marker genes.URL: https://github.com/Ecogenomics/CheckMDOI: 10.1101/gr.186072.114

        Bin quality

        The quality of microbial genomes recovered from isolates, single cells, and metagenomes.

        An automated method for assessing the quality of a genome using a broader set of marker genes specific to the position of a genome within a reference genome tree and information about the collocation of these genes.

        Showing 239/239 rows and 6/6 columns.
        Bin IdMarker lineageGenomesMarkersMarker setsCompletenessContamination
        MEGAHIT-CONCOCT-group-0_2
        c__Bacilli (UID259)
        750
        275
        151
        98.68%
        0.88%
        MEGAHIT-CONCOCT-group-0_3
        c__Bacilli (UID256)
        765
        274
        150
        98.00%
        0.33%
        MEGAHIT-CONCOCT-group-0_4
        o__Lactobacillales (UID374)
        471
        350
        191
        48.52%
        9.51%
        MEGAHIT-CONCOCT-group-0_5
        k__Bacteria (UID203)
        5449
        104
        58
        45.30%
        0.00%
        MEGAHIT-CONCOCT-group-0_6
        o__Lactobacillales (UID462)
        85
        367
        162
        99.07%
        4.22%
        MEGAHIT-CONCOCT-group-0_7
        k__Bacteria (UID203)
        5449
        103
        58
        0.99%
        0.00%
        MEGAHIT-CONCOCT-group-0_8
        k__Bacteria (UID203)
        5449
        104
        58
        12.98%
        4.55%
        MEGAHIT-CONCOCT-group-0_9
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_11
        o__Actinomycetales (UID1593)
        69
        400
        198
        52.19%
        1.73%
        MEGAHIT-CONCOCT-group-0_13
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_14
        c__Bacilli (UID285)
        586
        325
        181
        95.86%
        2.67%
        MEGAHIT-CONCOCT-group-0_16
        g__Staphylococcus (UID298)
        56
        805
        176
        51.27%
        1.38%
        MEGAHIT-CONCOCT-group-0_17
        g__Bacillus (UID864)
        93
        711
        241
        90.38%
        27.59%
        MEGAHIT-CONCOCT-group-0_19
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_20
        k__Bacteria (UID203)
        5449
        101
        56
        16.07%
        0.00%
        MEGAHIT-CONCOCT-group-0_21
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_23
        k__Bacteria (UID203)
        5449
        104
        58
        3.45%
        0.00%
        MEGAHIT-CONCOCT-group-0_24
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_25
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_28
        g__Staphylococcus (UID294)
        60
        773
        178
        99.68%
        3.23%
        MEGAHIT-CONCOCT-group-0_29
        k__Bacteria (UID203)
        5449
        104
        58
        49.29%
        3.45%
        MEGAHIT-CONCOCT-group-0_30
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_31
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_32
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_33
        k__Bacteria (UID203)
        5449
        102
        57
        100.00%
        42.41%
        MEGAHIT-CONCOCT-group-0_34
        k__Bacteria (UID203)
        5449
        104
        58
        66.33%
        6.90%
        MEGAHIT-CONCOCT-group-0_36
        c__Bacilli (UID256)
        765
        275
        151
        9.08%
        1.55%
        MEGAHIT-CONCOCT-group-0_37
        k__Bacteria (UID203)
        5449
        104
        58
        10.34%
        1.72%
        MEGAHIT-CONCOCT-group-0_38
        o__Lactobacillales (UID355)
        490
        336
        184
        91.84%
        3.46%
        MEGAHIT-CONCOCT-group-0_39
        f__Enterobacteriaceae (UID5124)
        134
        1173
        336
        91.64%
        4.47%
        MEGAHIT-CONCOCT-group-0_40
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_42
        c__Bacilli (UID256)
        765
        274
        150
        99.60%
        1.22%
        MEGAHIT-CONCOCT-group-0_43
        c__Bacilli (UID285)
        586
        324
        180
        92.02%
        31.46%
        MEGAHIT-CONCOCT-group-0_44
        c__Gammaproteobacteria (UID4445)
        228
        583
        244
        99.59%
        0.75%
        MEGAHIT-CONCOCT-group-0_45
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_47
        k__Bacteria (UID203)
        5449
        104
        58
        32.13%
        1.72%
        MEGAHIT-CONCOCT-group-0_48
        o__Lactobacillales (UID544)
        293
        475
        267
        99.63%
        0.19%
        MEGAHIT-CONCOCT-group-0_49
        k__Bacteria (UID203)
        5449
        104
        58
        20.49%
        0.86%
        MEGAHIT-CONCOCT-group-0_50
        root (UID1)
        5656
        56
        24
        4.17%
        0.00%
        MEGAHIT-CONCOCT-group-0_51
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_53
        f__Bacillaceae (UID829)
        128
        559
        183
        91.97%
        4.47%
        MEGAHIT-CONCOCT-group-0_54
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_55
        f__Bacillaceae (UID829)
        128
        559
        183
        5.58%
        0.73%
        MEGAHIT-CONCOCT-group-0_56
        o__Lactobacillales (UID374)
        471
        348
        189
        98.14%
        0.00%
        MEGAHIT-CONCOCT-group-0_58
        f__Paenibacillaceae (UID973)
        32
        468
        170
        87.07%
        0.23%
        MEGAHIT-CONCOCT-group-0_60
        k__Bacteria (UID203)
        5449
        104
        58
        100.00%
        6.82%
        MEGAHIT-CONCOCT-group-0_61
        f__Enterobacteriaceae (UID5124)
        134
        1173
        336
        91.95%
        10.25%
        MEGAHIT-CONCOCT-group-0_62
        g__Staphylococcus (UID301)
        45
        940
        178
        97.25%
        1.25%
        MEGAHIT-CONCOCT-group-0_63
        c__Bacilli (UID285)
        586
        324
        180
        99.08%
        5.42%
        MEGAHIT-CONCOCT-group-0_64
        g__Lactobacillus (UID436)
        31
        586
        184
        50.33%
        0.54%
        MEGAHIT-CONCOCT-group-0_65
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_66
        o__Lactobacillales (UID544)
        293
        475
        267
        96.64%
        1.86%
        MEGAHIT-CONCOCT-group-0_67
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_69
        k__Bacteria (UID203)
        5449
        104
        58
        98.28%
        20.69%
        MEGAHIT-CONCOCT-group-0_70
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_73
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_74
        o__Bacillales (UID828)
        139
        508
        174
        97.18%
        4.81%
        MEGAHIT-CONCOCT-group-0_75
        f__Enterobacteriaceae (UID5054)
        223
        875
        305
        97.47%
        4.30%
        MEGAHIT-CONCOCT-group-0_76
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_77
        k__Bacteria (UID203)
        5449
        103
        57
        21.41%
        0.16%
        MEGAHIT-CONCOCT-group-0_78
        f__Moraxellaceae (UID4680)
        86
        689
        365
        28.53%
        2.66%
        MEGAHIT-CONCOCT-group-0_79
        k__Bacteria (UID203)
        5449
        103
        57
        18.69%
        0.00%
        MEGAHIT-CONCOCT-group-0_80
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_81
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_82
        k__Bacteria (UID203)
        5449
        104
        58
        93.18%
        134.71%
        MEGAHIT-CONCOCT-group-0_83
        k__Bacteria (UID203)
        5449
        104
        58
        79.31%
        1.72%
        MEGAHIT-CONCOCT-group-0_85
        c__Bacilli (UID285)
        586
        324
        180
        96.27%
        9.51%
        MEGAHIT-CONCOCT-group-0_87
        c__Bacilli (UID256)
        765
        275
        151
        96.62%
        2.87%
        MEGAHIT-CONCOCT-group-0_88
        k__Bacteria (UID203)
        5449
        103
        57
        99.20%
        95.37%
        MEGAHIT-CONCOCT-group-0_89
        g__Bacillus (UID865)
        36
        1200
        269
        73.69%
        17.45%
        MEGAHIT-CONCOCT-group-0_90
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_92
        k__Bacteria (UID203)
        5449
        101
        57
        28.42%
        0.00%
        MEGAHIT-CONCOCT-group-0_94
        o__Actinomycetales (UID1572)
        580
        288
        173
        16.68%
        0.87%
        MEGAHIT-CONCOCT-group-0_95
        o__Lactobacillales (UID544)
        293
        473
        265
        98.83%
        4.29%
        MEGAHIT-CONCOCT-group-0_97
        o__Lactobacillales (UID544)
        293
        473
        265
        88.99%
        2.13%
        MEGAHIT-CONCOCT-group-0_99
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_100
        k__Archaea (UID2)
        207
        149
        107
        3.12%
        0.47%
        MEGAHIT-CONCOCT-group-0_101
        o__Lactobacillales (UID543)
        294
        471
        264
        99.81%
        2.37%
        MEGAHIT-CONCOCT-group-0_102
        k__Bacteria (UID203)
        5449
        104
        58
        88.97%
        78.16%
        MEGAHIT-CONCOCT-group-0_103
        root (UID1)
        5656
        56
        24
        0.52%
        0.00%
        MEGAHIT-CONCOCT-group-0_104
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_105
        o__Lactobacillales (UID544)
        293
        473
        265
        97.91%
        11.56%
        MEGAHIT-CONCOCT-group-0_106
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_107
        g__Staphylococcus (UID294)
        60
        773
        178
        98.55%
        0.50%
        MEGAHIT-CONCOCT-group-0_108
        k__Bacteria (UID203)
        5449
        104
        58
        5.96%
        0.00%
        MEGAHIT-CONCOCT-group-0_109
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_110
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_111
        f__Enterobacteriaceae (UID5124)
        134
        1173
        336
        95.98%
        6.25%
        MEGAHIT-CONCOCT-group-0_112
        o__Lactobacillales (UID374)
        471
        348
        189
        96.97%
        0.84%
        MEGAHIT-CONCOCT-group-0_113
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-CONCOCT-group-0_114
        o__Bacillales (UID828)
        139
        508
        174
        62.44%
        1.57%
        MEGAHIT-MaxBin2-group-0.001
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MaxBin2-group-0.002
        o__Lactobacillales (UID462)
        85
        367
        162
        98.25%
        2.78%
        MEGAHIT-MaxBin2-group-0.003
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MaxBin2-group-0.004
        o__Lactobacillales (UID543)
        294
        471
        264
        99.43%
        2.37%
        MEGAHIT-MaxBin2-group-0.005
        f__Leuconostocaceae (UID486)
        29
        443
        178
        96.96%
        7.01%
        MEGAHIT-MaxBin2-group-0.006
        g__Staphylococcus (UID294)
        60
        773
        178
        99.68%
        1.98%
        MEGAHIT-MaxBin2-group-0.007
        f__Enterobacteriaceae (UID5124)
        134
        1173
        336
        94.60%
        10.75%
        MEGAHIT-MaxBin2-group-0.009
        o__Lactobacillales (UID374)
        471
        348
        189
        99.03%
        2.70%
        MEGAHIT-MaxBin2-group-0.010
        f__Enterobacteriaceae (UID5124)
        134
        1173
        336
        93.10%
        3.70%
        MEGAHIT-MaxBin2-group-0.011
        g__Staphylococcus (UID301)
        45
        940
        178
        95.05%
        1.89%
        MEGAHIT-MaxBin2-group-0.012
        k__Bacteria (UID203)
        5449
        104
        58
        98.28%
        3.45%
        MEGAHIT-MaxBin2-group-0.013
        o__Lactobacillales (UID374)
        471
        348
        189
        96.44%
        0.58%
        MEGAHIT-MaxBin2-group-0.015
        f__Enterobacteriaceae (UID5124)
        134
        1173
        336
        94.84%
        11.80%
        MEGAHIT-MaxBin2-group-0.016
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MaxBin2-group-0.017
        o__Lactobacillales (UID544)
        293
        473
        265
        97.34%
        8.55%
        MEGAHIT-MaxBin2-group-0.023
        f__Enterobacteriaceae (UID5054)
        223
        875
        305
        98.83%
        13.03%
        MEGAHIT-MaxBin2-group-0.025
        k__Bacteria (UID203)
        5449
        104
        58
        98.12%
        14.11%
        MEGAHIT-MaxBin2-group-0.026
        g__Lactobacillus (UID436)
        31
        586
        184
        56.99%
        12.64%
        MEGAHIT-MaxBin2-group-0.027
        f__Enterobacteriaceae (UID5121)
        138
        1162
        336
        83.34%
        32.14%
        MEGAHIT-MaxBin2-group-0.028
        k__Bacteria (UID203)
        5449
        104
        58
        0.86%
        0.00%
        MEGAHIT-MaxBin2-group-0.029
        g__Bacillus (UID864)
        93
        711
        241
        87.09%
        37.97%
        MEGAHIT-MaxBin2-group-0.030
        o__Bacillales (UID828)
        139
        508
        174
        98.92%
        6.77%
        MEGAHIT-MaxBin2-group-0.032
        k__Bacteria (UID203)
        5449
        104
        58
        60.92%
        35.85%
        MEGAHIT-MaxBin2-group-0.033
        f__Bacillaceae (UID829)
        128
        559
        183
        92.78%
        4.58%
        MEGAHIT-MaxBin2-group-0.034
        c__Gammaproteobacteria (UID4445)
        228
        583
        244
        99.59%
        2.35%
        MEGAHIT-MaxBin2-group-0.035
        o__Lactobacillales (UID544)
        293
        475
        267
        97.35%
        4.16%
        MEGAHIT-MaxBin2-group-0.036
        c__Bacilli (UID285)
        586
        324
        180
        99.32%
        4.99%
        MEGAHIT-MaxBin2-group-0.037
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MaxBin2-group-0.038
        k__Bacteria (UID203)
        5449
        104
        58
        87.77%
        46.27%
        MEGAHIT-MaxBin2-group-0.040
        k__Bacteria (UID203)
        5449
        104
        58
        100.00%
        35.76%
        MEGAHIT-MaxBin2-group-0.041
        o__Bacillales (UID828)
        139
        508
        174
        91.51%
        14.87%
        MEGAHIT-MaxBin2-group-0.042
        c__Bacilli (UID256)
        765
        275
        151
        96.69%
        1.55%
        MEGAHIT-MaxBin2-group-0.044
        o__Lactobacillales (UID544)
        293
        473
        265
        90.27%
        2.69%
        MEGAHIT-MaxBin2-group-0.045
        c__Bacilli (UID285)
        586
        325
        181
        96.96%
        3.50%
        MEGAHIT-MaxBin2-group-0.046
        o__Lactobacillales (UID544)
        293
        473
        265
        99.35%
        3.53%
        MEGAHIT-MaxBin2-group-0.048
        k__Bacteria (UID203)
        5449
        104
        58
        60.34%
        0.00%
        MEGAHIT-MaxBin2-group-0.049
        k__Bacteria (UID203)
        5449
        104
        58
        11.21%
        0.86%
        MEGAHIT-MaxBin2-group-0.051
        k__Bacteria (UID203)
        5449
        103
        57
        98.25%
        11.16%
        MEGAHIT-MaxBin2-group-0.052
        f__Micrococcaceae (UID1623)
        39
        457
        218
        29.97%
        0.00%
        MEGAHIT-MaxBin2-group-0.053
        c__Bacilli (UID285)
        586
        324
        180
        97.53%
        9.56%
        MEGAHIT-MaxBin2-group-0.054
        k__Bacteria (UID203)
        5449
        104
        58
        89.59%
        39.83%
        MEGAHIT-MaxBin2-group-0.055
        c__Bacilli (UID259)
        750
        275
        151
        98.68%
        7.33%
        MEGAHIT-MaxBin2-group-0.056
        k__Bacteria (UID203)
        5449
        104
        58
        96.55%
        42.08%
        MEGAHIT-MaxBin2-group-0.057
        c__Bacilli (UID256)
        765
        274
        150
        91.11%
        10.47%
        MEGAHIT-MaxBin2-group-0.058
        k__Bacteria (UID203)
        5449
        103
        57
        46.33%
        13.34%
        MEGAHIT-MaxBin2-group-0.059
        o__Actinomycetales (UID1572)
        580
        286
        172
        9.30%
        0.00%
        MEGAHIT-MaxBin2-group-0.060
        k__Bacteria (UID203)
        5449
        104
        58
        81.11%
        64.82%
        MEGAHIT-MaxBin2-group-0.061
        g__Bacillus (UID864)
        93
        711
        241
        81.99%
        22.38%
        MEGAHIT-MaxBin2-group-0.063
        o__Actinomycetales (UID1572)
        580
        288
        173
        46.59%
        12.19%
        MEGAHIT-MaxBin2-group-0.064
        o__Actinomycetales (UID1809)
        267
        400
        222
        98.87%
        0.45%
        MEGAHIT-MaxBin2-group-0.065
        c__Bacilli (UID256)
        765
        274
        150
        92.80%
        0.56%
        MEGAHIT-MaxBin2-group-0.066
        f__Paenibacillaceae (UID973)
        32
        468
        170
        67.76%
        29.31%
        MEGAHIT-MaxBin2-group-0.067
        k__Bacteria (UID203)
        5449
        104
        58
        79.31%
        1.72%
        MEGAHIT-MaxBin2-group-0.068
        c__Bacilli (UID256)
        765
        274
        150
        94.68%
        8.33%
        MEGAHIT-MaxBin2-group-0.069
        o__Actinomycetales (UID1572)
        580
        288
        173
        83.82%
        8.67%
        MEGAHIT-MaxBin2-group-0.070
        o__Actinomycetales (UID1593)
        69
        400
        198
        52.52%
        1.48%
        MEGAHIT-MaxBin2-group-0.071
        o__Actinomycetales (UID1572)
        580
        288
        173
        51.31%
        11.61%
        MEGAHIT-MaxBin2-group-0.072
        o__Actinomycetales (UID1530)
        622
        257
        151
        93.21%
        3.53%
        MEGAHIT-MaxBin2-group-0.073
        g__Bacillus (UID864)
        93
        711
        241
        72.04%
        3.71%
        MEGAHIT-MaxBin2-group-0.074
        k__Bacteria (UID203)
        5449
        103
        57
        55.90%
        14.04%
        MEGAHIT-MaxBin2-group-0.075
        k__Bacteria (UID203)
        5449
        103
        57
        47.37%
        5.26%
        MEGAHIT-MetaBAT2-group-0.1
        f__Leuconostocaceae (UID486)
        29
        443
        178
        20.11%
        0.56%
        MEGAHIT-MetaBAT2-group-0.2
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.3
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.4
        k__Bacteria (UID203)
        5449
        104
        58
        6.90%
        0.00%
        MEGAHIT-MetaBAT2-group-0.6
        g__Staphylococcus (UID294)
        60
        773
        178
        95.55%
        0.46%
        MEGAHIT-MetaBAT2-group-0.8
        k__Bacteria (UID203)
        5449
        104
        58
        0.86%
        0.00%
        MEGAHIT-MetaBAT2-group-0.9
        k__Bacteria (UID203)
        5449
        104
        58
        39.66%
        1.72%
        MEGAHIT-MetaBAT2-group-0.10
        k__Bacteria (UID203)
        5449
        104
        58
        17.24%
        0.00%
        MEGAHIT-MetaBAT2-group-0.11
        g__Staphylococcus (UID301)
        45
        940
        178
        94.78%
        0.11%
        MEGAHIT-MetaBAT2-group-0.12
        k__Bacteria (UID203)
        5449
        101
        56
        37.50%
        1.79%
        MEGAHIT-MetaBAT2-group-0.13
        k__Bacteria (UID203)
        5449
        104
        58
        37.93%
        1.72%
        MEGAHIT-MetaBAT2-group-0.14
        k__Bacteria (UID203)
        5449
        104
        58
        24.14%
        0.00%
        MEGAHIT-MetaBAT2-group-0.15
        c__Bacilli (UID285)
        586
        324
        180
        73.96%
        9.25%
        MEGAHIT-MetaBAT2-group-0.16
        k__Bacteria (UID203)
        5449
        104
        58
        40.86%
        1.72%
        MEGAHIT-MetaBAT2-group-0.17
        k__Bacteria (UID203)
        5449
        104
        58
        45.25%
        6.32%
        MEGAHIT-MetaBAT2-group-0.18
        k__Bacteria (UID203)
        5449
        104
        58
        82.76%
        0.00%
        MEGAHIT-MetaBAT2-group-0.19
        g__Staphylococcus (UID294)
        60
        773
        178
        97.84%
        1.62%
        MEGAHIT-MetaBAT2-group-0.20
        k__Bacteria (UID203)
        5449
        101
        56
        2.68%
        0.00%
        MEGAHIT-MetaBAT2-group-0.21
        c__Bacilli (UID256)
        765
        274
        150
        91.44%
        0.56%
        MEGAHIT-MetaBAT2-group-0.23
        o__Lactobacillales (UID374)
        471
        348
        189
        98.50%
        1.64%
        MEGAHIT-MetaBAT2-group-0.24
        o__Lactobacillales (UID544)
        293
        473
        265
        92.38%
        0.81%
        MEGAHIT-MetaBAT2-group-0.25
        root (UID1)
        5656
        56
        24
        4.17%
        0.00%
        MEGAHIT-MetaBAT2-group-0.26
        o__Lactobacillales (UID544)
        293
        473
        265
        98.45%
        3.14%
        MEGAHIT-MetaBAT2-group-0.27
        k__Bacteria (UID203)
        5449
        104
        58
        0.86%
        0.00%
        MEGAHIT-MetaBAT2-group-0.28
        k__Bacteria (UID203)
        5449
        103
        57
        53.51%
        0.00%
        MEGAHIT-MetaBAT2-group-0.29
        k__Bacteria (UID203)
        5449
        104
        58
        12.07%
        0.00%
        MEGAHIT-MetaBAT2-group-0.30
        f__Bacillaceae (UID829)
        128
        559
        183
        91.69%
        4.21%
        MEGAHIT-MetaBAT2-group-0.31
        f__Paenibacillaceae (UID973)
        32
        468
        170
        89.32%
        4.80%
        MEGAHIT-MetaBAT2-group-0.33
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.34
        c__Bacilli (UID256)
        765
        274
        150
        94.19%
        8.19%
        MEGAHIT-MetaBAT2-group-0.35
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.36
        c__Bacilli (UID256)
        765
        274
        150
        92.00%
        0.33%
        MEGAHIT-MetaBAT2-group-0.37
        c__Bacilli (UID259)
        750
        275
        151
        89.50%
        19.76%
        MEGAHIT-MetaBAT2-group-0.40
        o__Bacillales (UID828)
        139
        508
        174
        69.48%
        0.22%
        MEGAHIT-MetaBAT2-group-0.41
        o__Lactobacillales (UID544)
        293
        473
        265
        93.68%
        4.70%
        MEGAHIT-MetaBAT2-group-0.42
        o__Lactobacillales (UID543)
        294
        471
        264
        53.22%
        0.00%
        MEGAHIT-MetaBAT2-group-0.45
        k__Bacteria (UID203)
        5449
        104
        58
        63.20%
        3.45%
        MEGAHIT-MetaBAT2-group-0.46
        o__Bacillales (UID828)
        139
        508
        174
        97.84%
        2.73%
        MEGAHIT-MetaBAT2-group-0.47
        o__Actinomycetales (UID1530)
        622
        257
        151
        95.64%
        0.72%
        MEGAHIT-MetaBAT2-group-0.48
        root (UID1)
        5656
        56
        24
        4.17%
        0.00%
        MEGAHIT-MetaBAT2-group-0.49
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.50
        k__Bacteria (UID203)
        5449
        103
        57
        44.02%
        0.88%
        MEGAHIT-MetaBAT2-group-0.51
        c__Gammaproteobacteria (UID4445)
        228
        583
        244
        99.18%
        0.75%
        MEGAHIT-MetaBAT2-group-0.52
        o__Lactobacillales (UID544)
        293
        475
        267
        95.36%
        1.62%
        MEGAHIT-MetaBAT2-group-0.53
        root (UID1)
        5656
        56
        24
        4.17%
        0.00%
        MEGAHIT-MetaBAT2-group-0.54
        k__Bacteria (UID203)
        5449
        104
        58
        62.41%
        6.90%
        MEGAHIT-MetaBAT2-group-0.55
        k__Bacteria (UID203)
        5449
        103
        57
        9.41%
        0.00%
        MEGAHIT-MetaBAT2-group-0.56
        k__Bacteria (UID203)
        5449
        103
        57
        22.22%
        0.00%
        MEGAHIT-MetaBAT2-group-0.57
        c__Bacilli (UID285)
        586
        325
        181
        95.86%
        3.50%
        MEGAHIT-MetaBAT2-group-0.58
        root (UID1)
        5656
        56
        24
        20.83%
        0.00%
        MEGAHIT-MetaBAT2-group-0.59
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.60
        o__Lactobacillales (UID462)
        85
        367
        162
        98.25%
        2.78%
        MEGAHIT-MetaBAT2-group-0.61
        o__Actinomycetales (UID1593)
        69
        400
        198
        27.00%
        0.13%
        MEGAHIT-MetaBAT2-group-0.63
        k__Bacteria (UID203)
        5449
        100
        55
        16.18%
        4.33%
        MEGAHIT-MetaBAT2-group-0.64
        k__Bacteria (UID203)
        5449
        104
        58
        79.31%
        1.72%
        MEGAHIT-MetaBAT2-group-0.65
        f__Leuconostocaceae (UID486)
        29
        443
        178
        77.30%
        0.75%
        MEGAHIT-MetaBAT2-group-0.66
        c__Bacilli (UID259)
        750
        275
        151
        81.46%
        0.88%
        MEGAHIT-MetaBAT2-group-0.67
        k__Bacteria (UID203)
        5449
        104
        58
        17.24%
        0.00%
        MEGAHIT-MetaBAT2-group-0.70
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.71
        k__Bacteria (UID203)
        5449
        104
        58
        54.70%
        21.30%
        MEGAHIT-MetaBAT2-group-0.72
        o__Lactobacillales (UID355)
        490
        336
        184
        88.16%
        2.69%
        MEGAHIT-MetaBAT2-group-0.73
        o__Lactobacillales (UID374)
        471
        350
        191
        72.75%
        0.70%
        MEGAHIT-MetaBAT2-group-0.74
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.75
        k__Bacteria (UID203)
        5449
        101
        56
        13.39%
        0.00%
        MEGAHIT-MetaBAT2-group-0.76
        o__Actinomycetales (UID1572)
        580
        288
        173
        87.26%
        2.99%
        MEGAHIT-MetaBAT2-group-0.77
        root (UID1)
        5656
        56
        24
        4.17%
        0.00%
        MEGAHIT-MetaBAT2-group-0.78
        o__Lactobacillales (UID544)
        293
        475
        267
        99.63%
        0.19%
        MEGAHIT-MetaBAT2-group-0.79
        root (UID1)
        5656
        56
        24
        4.17%
        0.00%
        MEGAHIT-MetaBAT2-group-0.80
        k__Bacteria (UID203)
        5449
        104
        58
        98.28%
        20.69%
        MEGAHIT-MetaBAT2-group-0.81
        k__Bacteria (UID203)
        5449
        104
        58
        5.17%
        0.00%
        MEGAHIT-MetaBAT2-group-0.82
        c__Bacilli (UID285)
        586
        324
        180
        97.66%
        2.31%
        MEGAHIT-MetaBAT2-group-0.83
        k__Bacteria (UID203)
        5449
        104
        58
        18.10%
        0.00%
        MEGAHIT-MetaBAT2-group-0.84
        g__Bacillus (UID902)
        44
        1171
        324
        12.57%
        0.23%
        MEGAHIT-MetaBAT2-group-0.85
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.86
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.88
        c__Bacilli (UID256)
        765
        274
        150
        93.73%
        7.00%
        MEGAHIT-MetaBAT2-group-0.89
        k__Bacteria (UID203)
        5449
        104
        58
        13.79%
        1.72%
        MEGAHIT-MetaBAT2-group-0.90
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.92
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.93
        c__Bacilli (UID285)
        586
        324
        180
        95.72%
        3.63%
        MEGAHIT-MetaBAT2-group-0.94
        o__Lactobacillales (UID374)
        471
        348
        189
        93.74%
        0.13%
        MEGAHIT-MetaBAT2-group-0.95
        root (UID1)
        5656
        56
        24
        4.17%
        0.00%
        MEGAHIT-MetaBAT2-group-0.96
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.97
        o__Actinomycetales (UID1809)
        267
        400
        222
        98.87%
        0.45%
        MEGAHIT-MetaBAT2-group-0.98
        f__Enterobacteriaceae (UID5054)
        223
        875
        305
        91.17%
        2.71%
        MEGAHIT-MetaBAT2-group-0.99
        root (UID1)
        5656
        56
        24
        0.00%
        0.00%
        MEGAHIT-MetaBAT2-group-0.100
        k__Bacteria (UID203)
        5449
        103
        57
        27.51%
        0.00%

        Prokka

        Rapid annotation of prokaryotic genomes.URL: http://www.vicbioinformatics.com/software.prokka.shtmlDOI: 10.1093/bioinformatics/btu153

        This barplot shows the distribution of different types of features found in each contig.

        Prokka can detect different features:

        • CDS
        • rRNA
        • tmRNA
        • tRNA
        • miscRNA
        • signal peptides
        • CRISPR arrays

        This barplot shows you the distribution of these different types of features found in each contig.

        Created with MultiQC

        GTDB-Tk

        Assigns objective taxonomic classifications to bacterial and archaeal genomes.URL: https://ecogenomics.github.io/GTDBTk/index.htmlDOI: 10.1093/bioinformatics/btac672

        MAG taxonomy

        The taxonomy of a MAG as found by GTDB.

        GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. It is designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes.

        Showing 112/112 rows and 6/8 columns.
        User genomeClassificationFull classificationClassification methodANI to closest genomeAF to closest genomeREDWarningsNotes
        MEGAHIT-CONCOCT-group-0_2.fa
        s__Kurthia gibsonii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_A; f__Planococcaceae; g__Kurthia; s__Kurthia gibsonii
        ani_screen
        98.8
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_3.fa
        s__Virgibacillus halotolerans
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Virgibacillus; s__Virgibacillus halotolerans
        ani_screen
        98.9
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_4.fa
        s__
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Bacillus; s__
        taxonomic classification defined by topology and ANI
        1.0
        MEGAHIT-CONCOCT-group-0_5.fa
        s__Superficieibacter sp900766525
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Superficieibacter; s__Superficieibacter sp900766525
        ani_screen
        98.4
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_6.fa
        s__Lactiplantibacillus plantarum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus plantarum
        ani_screen
        99.6
        1.0
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_11.fa
        s__Microbacterium sp002456035
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium sp002456035
        ani_screen
        98.8
        0.7
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_14.fa
        s__Mammaliicoccus sciuri
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Mammaliicoccus; s__Mammaliicoccus sciuri
        ani_screen
        98.2
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_16.fa
        s__Staphylococcus hominis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus hominis
        ani_screen
        98.1
        0.7
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_28.fa
        s__Staphylococcus warneri
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus warneri
        ani_screen
        99.6
        1.0
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_29.fa
        s__Klebsiella pneumoniae
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
        ani_screen
        99.2
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_34.fa
        s__Pantoea astica
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea astica
        ani_screen
        99.7
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_38.fa
        s__Furfurilactobacillus milii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Furfurilactobacillus; s__Furfurilactobacillus milii
        ani_screen
        99.5
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_39.fa
        s__Enterobacter hormaechei_C
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter hormaechei_C
        ani_screen
        96.9
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_42.fa
        s__Oceanobacillus sojae
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Oceanobacillus; s__Oceanobacillus sojae
        ani_screen
        99.5
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_44.fa
        s__Stutzerimonas stutzeri
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Stutzerimonas; s__Stutzerimonas stutzeri
        ani_screen
        97.7
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_47.fa
        s__
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Bacillus; s__
        taxonomic classification defined by topology and ANI
        1.0
        MEGAHIT-CONCOCT-group-0_48.fa
        s__Enterococcus faecalis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus faecalis
        ani_screen
        98.7
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_53.fa
        s__Niallia circulans_A
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_B; f__DSM-18226; g__Niallia; s__Niallia circulans_A
        ani_screen
        99.4
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_56.fa
        s__Leuconostoc pseudomesenteroides
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc pseudomesenteroides
        ani_screen
        98.0
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_58.fa
        s__Paenibacillus cookii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Paenibacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus cookii
        ani_screen
        98.7
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_60.fa
        s__Leuconostoc citreum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc citreum
        ani_screen
        99.8
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_62.fa
        s__Staphylococcus aureus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
        ani_screen
        99.1
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_63.fa
        s__Staphylococcus saprophyticus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus saprophyticus
        ani_screen
        99.8
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_64.fa
        s__Lacticaseibacillus paracasei
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus paracasei
        ani_screen
        98.8
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_66.fa
        s__Enterococcus_B durans
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_B; s__Enterococcus_B durans
        ani_screen
        98.5
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_74.fa
        s__Priestia flexa
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae_H; g__Priestia; s__Priestia flexa
        ani_screen
        99.1
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_75.fa
        s__Pantoea agglomerans
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea agglomerans
        ani_screen
        98.4
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_83.fa
        s__Brevibacterium permense
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Brevibacteriaceae; g__Brevibacterium; s__Brevibacterium permense
        ani_screen
        97.8
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_85.fa
        s__Staphylococcus pseudoxylosus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus pseudoxylosus
        ani_screen
        97.3
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_87.fa
        s__Terribacillus halophilus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Terribacillus; s__Terribacillus halophilus
        ani_screen
        98.5
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_95.fa
        s__Enterococcus_D innesii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_D; s__Enterococcus_D innesii
        ani_screen
        97.5
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_97.fa
        s__Enterococcus_D gallinarum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_D; s__Enterococcus_D gallinarum
        ani_screen
        97.7
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_101.fa
        s__Lactococcus lactis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus lactis
        ani_screen
        98.8
        0.8
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_107.fa
        s__Staphylococcus epidermidis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
        ani_screen
        97.1
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_111.fa
        s__Enterobacter asburiae_E
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter asburiae_E
        ani_screen
        98.0
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_112.fa
        s__Leuconostoc mesenteroides
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc mesenteroides
        ani_screen
        99.7
        0.9
        classification based on ANI only
        MEGAHIT-CONCOCT-group-0_114.fa
        s__Priestia megaterium
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae_H; g__Priestia; s__Priestia megaterium
        ani_screen
        99.0
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.002.fa
        s__Lactiplantibacillus plantarum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus plantarum
        ani_screen
        99.8
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.004.fa
        s__Lactococcus lactis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus lactis
        ani_screen
        98.9
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.005.fa
        s__Leuconostoc citreum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc citreum
        ani_screen
        99.8
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.006.fa
        s__Staphylococcus warneri
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus warneri
        ani_screen
        99.6
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.009.fa
        s__Leuconostoc pseudomesenteroides
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc pseudomesenteroides
        ani_screen
        97.9
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.010.fa
        s__Enterobacter asburiae_E
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter asburiae_E
        ani_screen
        98.0
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.011.fa
        s__Staphylococcus aureus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
        ani_screen
        99.1
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.012.fa
        s__Enterococcus faecalis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus faecalis
        ani_screen
        98.6
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.013.fa
        s__Leuconostoc mesenteroides
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc mesenteroides
        ani_screen
        99.7
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.017.fa
        s__Enterococcus_B lactis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_B; s__Enterococcus_B lactis
        ani_screen
        98.6
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.030.fa
        s__Priestia flexa
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae_H; g__Priestia; s__Priestia flexa
        ani_screen
        99.1
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.033.fa
        s__Niallia circulans_A
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_B; f__DSM-18226; g__Niallia; s__Niallia circulans_A
        ani_screen
        99.4
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.034.fa
        s__Stutzerimonas stutzeri
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Stutzerimonas; s__Stutzerimonas stutzeri
        ani_screen
        97.7
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.035.fa
        s__Enterococcus_B durans
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_B; s__Enterococcus_B durans
        ani_screen
        98.5
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.036.fa
        s__Staphylococcus saprophyticus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus saprophyticus
        ani_screen
        99.7
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.042.fa
        s__Terribacillus halophilus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Terribacillus; s__Terribacillus halophilus
        ani_screen
        98.5
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.044.fa
        s__Enterococcus_D gallinarum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_D; s__Enterococcus_D gallinarum
        ani_screen
        97.6
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.045.fa
        s__Mammaliicoccus sciuri
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Mammaliicoccus; s__Mammaliicoccus sciuri
        ani_screen
        98.4
        1.0
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.046.fa
        s__Enterococcus_D innesii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_D; s__Enterococcus_D innesii
        ani_screen
        97.5
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.048.fa
        s__Glutamicibacter creatinolyticus
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Micrococcaceae; g__Glutamicibacter; s__Glutamicibacter creatinolyticus
        ani_screen
        98.5
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.053.fa
        s__Staphylococcus pseudoxylosus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus pseudoxylosus
        ani_screen
        97.3
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.055.fa
        s__Kurthia gibsonii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_A; f__Planococcaceae; g__Kurthia; s__Kurthia gibsonii
        ani_screen
        98.6
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.064.fa
        s__Corynebacterium variabile
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Mycobacteriales; f__Mycobacteriaceae; g__Corynebacterium; s__Corynebacterium variabile
        ani_screen
        98.4
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.065.fa
        s__Oceanobacillus sojae
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Oceanobacillus; s__Oceanobacillus sojae
        ani_screen
        99.5
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.067.fa
        s__Brevibacterium permense
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Brevibacteriaceae; g__Brevibacterium; s__Brevibacterium permense
        ani_screen
        97.8
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.068.fa
        s__Oceanobacillus oncorhynchi
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Oceanobacillus; s__Oceanobacillus oncorhynchi
        ani_screen
        95.7
        0.8
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.069.fa
        s__Cellulosimicrobium funkei
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Cellulomonadaceae; g__Cellulosimicrobium; s__Cellulosimicrobium funkei
        ani_screen
        97.6
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.070.fa
        s__Microbacterium sp002456035
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium sp002456035
        ani_screen
        98.8
        0.7
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.072.fa
        s__Rothia halotolerans
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Micrococcaceae; g__Rothia; s__Rothia halotolerans
        ani_screen
        98.0
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.073.fa
        s__Bacillus paralicheniformis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Bacillus; s__Bacillus paralicheniformis
        ani_screen
        98.9
        0.9
        classification based on ANI only
        MEGAHIT-MaxBin2-group-0.075.fa
        s__Lysinibacillus irui
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_A; f__Planococcaceae; g__Lysinibacillus; s__Lysinibacillus irui
        ani_screen
        98.9
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.6.fa
        s__Staphylococcus epidermidis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
        ani_screen
        97.1
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.9.fa
        s__Bacillus paralicheniformis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Bacillus; s__Bacillus paralicheniformis
        ani_screen
        98.9
        1.0
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.11.fa
        s__Staphylococcus aureus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
        ani_screen
        99.1
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.12.fa
        s__Bacillus_A cereus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae_G; g__Bacillus_A; s__Bacillus_A cereus
        ani_screen
        98.5
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.13.fa
        s__Lactococcus lactis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus lactis
        ani_screen
        98.9
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.15.fa
        s__Staphylococcus equorum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus equorum
        ani_screen
        99.3
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.16.fa
        s__Enterobacter cloacae_M
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter cloacae_M
        ani_screen
        98.2
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.17.fa
        s__
        d__Bacteria; p__Bacillota; c__Bacilli; o__Paenibacillales; f__Paenibacillaceae; g__Paenibacillus; s__
        taxonomic classification defined by topology and ANI
        1.0
        MEGAHIT-MetaBAT2-group-0.18.fa
        s__Terribacillus halophilus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Terribacillus; s__Terribacillus halophilus
        ani_screen
        98.4
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.19.fa
        s__Staphylococcus warneri
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus warneri
        ani_screen
        99.7
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.21.fa
        s__Oceanobacillus sojae
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Oceanobacillus; s__Oceanobacillus sojae
        ani_screen
        99.5
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.23.fa
        s__Leuconostoc pseudomesenteroides
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc pseudomesenteroides
        ani_screen
        98.2
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.24.fa
        s__Enterococcus_D gallinarum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_D; s__Enterococcus_D gallinarum
        ani_screen
        97.7
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.26.fa
        s__Enterococcus_D innesii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_D; s__Enterococcus_D innesii
        ani_screen
        97.5
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.28.fa
        s__Lysinibacillus capsici
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_A; f__Planococcaceae; g__Lysinibacillus; s__Lysinibacillus capsici
        ani_screen
        98.8
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.30.fa
        s__Niallia circulans_A
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_B; f__DSM-18226; g__Niallia; s__Niallia circulans_A
        ani_screen
        99.4
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.31.fa
        s__Paenibacillus cookii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Paenibacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus cookii
        ani_screen
        98.7
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.34.fa
        s__Oceanobacillus oncorhynchi
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Oceanobacillus; s__Oceanobacillus oncorhynchi
        ani_screen
        95.7
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.36.fa
        s__Virgibacillus halotolerans
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Virgibacillus; s__Virgibacillus halotolerans
        ani_screen
        98.8
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.40.fa
        s__Priestia megaterium
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae_H; g__Priestia; s__Priestia megaterium
        ani_screen
        98.9
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.41.fa
        s__Enterococcus_B lactis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_B; s__Enterococcus_B lactis
        ani_screen
        98.5
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.42.fa
        s__Lactococcus lactis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus lactis
        ani_screen
        99.0
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.45.fa
        s__Enterobacter hormaechei_C
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter hormaechei_C
        ani_screen
        97.2
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.46.fa
        s__Priestia flexa
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae_H; g__Priestia; s__Priestia flexa
        ani_screen
        99.1
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.47.fa
        s__Rothia halotolerans
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Micrococcaceae; g__Rothia; s__Rothia halotolerans
        ani_screen
        98.0
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.50.fa
        s__Enterobacter asburiae_E
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter asburiae_E
        ani_screen
        98.0
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.51.fa
        s__Stutzerimonas stutzeri
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Stutzerimonas; s__Stutzerimonas stutzeri
        ani_screen
        97.7
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.52.fa
        s__Enterococcus_B durans
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_B; s__Enterococcus_B durans
        ani_screen
        98.6
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.54.fa
        s__Bacillus spizizenii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Bacillus; s__Bacillus spizizenii
        ani_screen
        96.0
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.57.fa
        s__Mammaliicoccus sciuri
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Mammaliicoccus; s__Mammaliicoccus sciuri
        ani_screen
        98.5
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.60.fa
        s__Lactiplantibacillus plantarum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus plantarum
        ani_screen
        99.8
        1.0
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.64.fa
        s__Brevibacterium permense
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Brevibacteriaceae; g__Brevibacterium; s__Brevibacterium permense
        ani_screen
        97.8
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.65.fa
        s__Leuconostoc citreum
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc citreum
        ani_screen
        99.9
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.66.fa
        s__Kurthia gibsonii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_A; f__Planococcaceae; g__Kurthia; s__Kurthia gibsonii
        ani_screen
        98.8
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.72.fa
        s__Furfurilactobacillus milii
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Furfurilactobacillus; s__Furfurilactobacillus milii
        ani_screen
        99.5
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.73.fa
        s__Liquorilactobacillus satsumensis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Liquorilactobacillus; s__Liquorilactobacillus satsumensis
        ani_screen
        99.3
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.76.fa
        s__Cellulosimicrobium funkei
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Actinomycetales; f__Cellulomonadaceae; g__Cellulosimicrobium; s__Cellulosimicrobium funkei
        ani_screen
        97.5
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.78.fa
        s__Enterococcus faecalis
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus faecalis
        ani_screen
        98.7
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.82.fa
        s__Staphylococcus saprophyticus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus saprophyticus
        ani_screen
        99.8
        1.0
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.88.fa
        s__Oceanobacillus profundus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Bacillales_D; f__Amphibacillaceae; g__Oceanobacillus; s__Oceanobacillus profundus
        ani_screen
        99.0
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.93.fa
        s__Staphylococcus pseudoxylosus
        d__Bacteria; p__Bacillota; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus pseudoxylosus
        ani_screen
        97.1
        0.8
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.94.fa
        s__Leuconostoc mesenteroides
        d__Bacteria; p__Bacillota; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Leuconostoc; s__Leuconostoc mesenteroides
        ani_screen
        99.8
        1.0
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.97.fa
        s__Corynebacterium variabile
        d__Bacteria; p__Actinomycetota; c__Actinomycetes; o__Mycobacteriales; f__Mycobacteriaceae; g__Corynebacterium; s__Corynebacterium variabile
        ani_screen
        98.4
        0.9
        classification based on ANI only
        MEGAHIT-MetaBAT2-group-0.98.fa
        s__Pantoea agglomerans
        d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea agglomerans
        ani_screen
        98.4
        0.9
        classification based on ANI only

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        GroupSoftwareVersion
        ADJUST_MAXBIN2_EXTcoreutils9.5
        BIN_SUMMARYpandas1.4.3
        python3.10.6
        BOWTIE2_ASSEMBLY_ALIGNbowtie22.4.2
        pigz2.3.4
        samtools1.11
        BOWTIE2_ASSEMBLY_BUILDbowtie22.4.2
        BOWTIE2_HOST_REMOVAL_ALIGNbowtie22.4.2
        BOWTIE2_HOST_REMOVAL_BUILDbowtie22.4.2
        CHECKM_LINEAGEWFcheckm1.2.3
        CHECKM_QAcheckm1.2.3
        CONCAT_BINQC_TSVcsvtk0.31.0
        CONCOCT_CONCOCTconcoct1.1.0
        CONCOCT_CONCOCTCOVERAGETABLEconcoct1.1.0
        CONCOCT_CUTUPFASTAconcoct1.1.0
        CONCOCT_EXTRACTFASTABINSconcoct1.1.0
        CONCOCT_MERGECUTUPCLUSTERINGconcoct1.1.0
        CONVERT_DEPTHSbioawk20110810
        DASTOOL_DASTOOLdastool1.1.7
        DASTOOL_FASTATOCONTIG2BIN_CONCOCTdastool1.1.7
        DASTOOL_FASTATOCONTIG2BIN_MAXBIN2dastool1.1.7
        DASTOOL_FASTATOCONTIG2BIN_METABAT2dastool1.1.7
        DASTOOL_FASTATOCONTIG2BIN_TIARAdastool1.1.7
        FASTQC_RAWfastqc0.12.1
        FASTQC_TRIMMEDfastqc0.12.1
        GENOMAD_ENDTOENDgenomad1.11.0
        GTDBTK_CLASSIFYWFgtdb_dbr226
        gtdbtk2.5.2
        GTDBTK_SUMMARYpandas1.4.3
        python3.10.6
        GUNZIP_BINSgunzip1.13
        GUNZIP_SHORTREAD_ASSEMBLIESgunzip1.13
        GUNZIP_UNBINSgunzip1.13
        MAG_DEPTHSpandas1.1.5
        python3.6.7
        MAG_DEPTHS_PLOTpandas1.3.0
        python3.9.6
        seaborn0.11.0
        MAG_DEPTHS_SUMMARYpandas1.4.3
        python3.10.6
        MAXBIN2maxbin22.2.7
        MEGAHITmegahit1.2.9
        METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREADmetabat22.15
        METABAT2_METABAT2metabat22.17
        PRODIGALpigz2.6
        prodigal2.6.3
        Prokkaprokka1.14.6
        QUASTmetaquast5.0.2
        python3.7.6
        QUAST_BINSmetaquast5.0.2
        python3.7.6
        QUAST_BINS_SUMMARYcp9.5
        RENAME_POSTDASTOOLcoreutils9.5
        RENAME_PREDASTOOLcoreutils9.5
        SEQKIT_STATSseqkit2.9.0
        SPLIT_FASTAbiopython1.7.4
        pandas1.1.5
        python3.6.7
        TIARA_SUMMARYcsvtk0.31.0
        TIARA_TIARAtiara1.0.3
        WorkflowNextflow25.04.8
        nf-core/magv5.0.0-g3d41222
        fastpfastp0.24.0
        r-baser-base4.1.3
        r-tidyverser-tidyverse1.3.1

        nf-core/mag Methods Description

        Suggested text and references to use when describing pipeline usage within the methods section of a publication.URL: https://github.com/nf-core/mag

        Methods

        Data was processed using nf-core/mag v5.0.0 ((doi: 10.1093/nargab/lqac007); Krakau et al., 2022) of the nf-core collection of workflows (Ewels et al., 2020), utilising reproducible software environments from the Bioconda (Grüning et al., 2018) and Biocontainers (da Veiga Leprevost et al., 2017) projects.

        The pipeline was executed with Nextflow v25.04.8 (Di Tommaso et al., 2017) with the following command:

        nextflow run 'https://github.com/nf-core/mag' -name anna_miso_batch2_fixedmetadata_2 -params-file 'https://api.cloud.seqera.io/ephemeral/EQqPLa7aYUd6yy01AtY76w.json' -with-tower -r 3d41222776d2ed7a78dd3fd4dd643690c49f6bd2 -resume a4414311-4649-4eac-9943-0ba7e73b85f0

        References

        • Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature Biotechnology, 35(4), 316-319. doi: 10.1038/nbt.3820
        • Ewels, P. A., Peltzer, A., Fillinger, S., Patel, H., Alneberg, J., Wilm, A., Garcia, M. U., Di Tommaso, P., & Nahnsen, S. (2020). The nf-core framework for community-curated bioinformatics pipelines. Nature Biotechnology, 38(3), 276-278. doi: 10.1038/s41587-020-0439-x
        • Krakau, S., Straub, D., Gourlé, H., Gabernet, G., & Nahnsen, S. (2022). nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning. NAR Genomics and Bioinformatics, 4(1). https://doi.org/10.1038/s41587-020-0439-x
        • Grüning, B., Dale, R., Sjödin, A., Chapman, B. A., Rowe, J., Tomkins-Tinch, C. H., Valieris, R., Köster, J., & Bioconda Team. (2018). Bioconda: sustainable and comprehensive software distribution for the life sciences. Nature Methods, 15(7), 475–476. doi: 10.1038/s41592-018-0046-7
        • da Veiga Leprevost, F., Grüning, B. A., Alves Aflitos, S., Röst, H. L., Uszkoreit, J., Barsnes, H., Vaudel, M., Moreno, P., Gatto, L., Weber, J., Bai, M., Jimenez, R. C., Sachsenberg, T., Pfeuffer, J., Vera Alvarez, R., Griss, J., Nesvizhskii, A. I., & Perez-Riverol, Y. (2017). BioContainers: an open-source and community-driven framework for software standardization. Bioinformatics (Oxford, England), 33(16), 2580–2582. doi: 10.1093/bioinformatics/btx192
        Notes:
        • The command above does not include parameters contained in any configs or profiles that may have been used. Ensure the config file is also uploaded with your publication!
        • You should also cite all software used within this run. Check the "Software Versions" of this report to get version information.

        nf-core/mag Workflow Summary

        - this information is collected when the pipeline is started.URL: https://github.com/nf-core/mag

        Input/output options

        email
        annalifousi@gmail.com
        input
        az://seqera/results/anna-mags/miso_batch2.csv
        multiqc_title
        MultiQC_miso_batch2_verysensitive
        outdir
        az://seqera/results/anna-mags/results_miso_batch2/

        Quality control for short reads options

        host_fasta
        az://seqera/raw/miso/miso_genome/miso_genome.fna
        host_removal_save_ids
        true
        host_removal_verysensitive
        true
        keep_phix
        true
        save_clipped_reads
        true
        save_hostremoved_reads
        true

        Quality control for long reads options

        longreads_min_quality
        1

        Taxonomic profiling options

        cat_db
        az://seqera/databases/cat/20241212_CAT_nr_website/
        gtdb_db
        az://seqera/databases/gtdb/GTDB/gtdbtk_package/full_package/release226/
        gtdbtk_max_contamination
        10.0
        gtdbtk_min_completeness
        30
        gtdbtk_use_full_tree
        true

        Assembly options

        coassemble_group
        true
        skip_flye
        true
        skip_metamdbg
        true
        skip_spades
        true
        skip_spadeshybrid
        true

        Gene prediction and annotation options

        skip_metaeuk
        true

        Virus identification options

        genomad_db
        az://seqera/databases/geNomadDB/14886553/genomad_db/
        run_virus_identification
        true

        Binning options

        bin_domain_classification
        true
        bin_max_size
        10000000
        exclude_unbins_from_postbinning
        true
        min_length_unbinned_contigs
        20000
        save_assembly_mapped_reads
        true

        Bin quality check options

        binqc_tool
        checkm
        busco_db_lineage
        N/A
        checkm_db
        az://seqera/databases/checkm_data/
        gunc_save_db
        true
        refine_bins_dastool
        true

        Core Nextflow options

        configFiles
        /.nextflow/assets/nf-core/mag/nextflow.config, /mnt/batch/tasks/workitems/nf-workflow-30EQVltna4oheP/job-1/nf-workflow-30EQVltna4oheP/wd/nextflow.config
        launchDir
        /mnt/batch/tasks/workitems/nf-workflow-30EQVltna4oheP/job-1/nf-workflow-30EQVltna4oheP/wd
        profile
        standard
        projectDir
        /.nextflow/assets/nf-core/mag
        revision
        5.0.0
        runName
        anna_miso_batch2_fixedmetadata_2
        userName
        root
        workDir
        /seqera/results/anna-mags/work